View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16089_low_13 (Length: 263)

Name: NF16089_low_13
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16089_low_13
NF16089_low_13
[»] chr4 (21 HSPs)
chr4 (20-263)||(5035291-5035534)
chr4 (21-247)||(2533983-2534210)
chr4 (21-261)||(2525425-2525665)
chr4 (24-219)||(2490801-2490996)
chr4 (21-251)||(2518903-2519133)
chr4 (28-161)||(2547221-2547354)
chr4 (21-222)||(2467212-2467416)
chr4 (28-86)||(2471733-2471791)
chr4 (27-81)||(5106632-5106686)
chr4 (29-81)||(2367981-2368033)
chr4 (22-149)||(2621413-2621540)
chr4 (24-81)||(2460279-2460336)
chr4 (30-81)||(2373547-2373598)
chr4 (30-79)||(12124524-12124573)
chr4 (29-145)||(2381645-2381761)
chr4 (30-85)||(2391333-2391388)
chr4 (18-69)||(2625589-2625640)
chr4 (28-156)||(2393836-2393963)
chr4 (24-77)||(2477256-2477309)
chr4 (32-81)||(2546825-2546874)
chr4 (28-72)||(2363162-2363206)
[»] chr8 (1 HSPs)
chr8 (29-74)||(18314718-18314763)
[»] chr5 (1 HSPs)
chr5 (29-73)||(28673354-28673398)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 5035291 - 5035534
Alignment:
Q  20 agtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaa 119  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5035291 agtaaggattagttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaa 5035390  T
Q  120 cttttcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagattt 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||| |||||||||    
T  5035391 cttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaagcggagattt 5035490  T
Q  220 tggctagaaacttgccgaggtcggcttctcgggaccacgcattg 263  Q
    | |||||||||| ||||||||  |||||||||||||| ||||||    
T  5035491 tcgctagaaactcgccgaggtgagcttctcgggaccaggcattg 5035534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 2533983 - 2534210
Alignment:
Q  21 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaac 120  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||     
T  2533983 gtaaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaat 2534082  T
Q  121 ttttcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagatttt 220  Q
    |||||||||||| |||||||||||| ||||||||||||||| | ||| ||| ||||||||||| |||||||||||||||||||| ||||   |||| ||     
T  2534083 ttttcatcttcttggacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaagtggaagtagagagttc 2534182  T
Q  221 ggctagaaacttgcc-gaggtcggcttc 247  Q
    ||||||||||| ||| ||||||||||||    
T  2534183 ggctagaaactcgccagaggtcggcttc 2534210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 2525425 - 2525665
Alignment:
Q  21 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaac 120  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||| |||||||||||||||||| || |||     
T  2525425 gtaaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaat 2525524  T
Q  121 ttttcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagatttt 220  Q
    ||||||| |||| ||||||| | ||||||||||||| |||| || ||   | ||||||||||| |||||||||||||||||||||| ||  ||||||||     
T  2525525 ttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagatttg 2525624  T
Q  221 ggctagaaacttgccgaggtcggcttctcgggaccacgcat 261  Q
    |  ||||||||  | |||||| |||||||||| || |||||    
T  2525625 gtttagaaactcactgaggtcagcttctcgggcccccgcat 2525665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 2490801 - 2490996
Alignment:
Q  24 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttt 123  Q
    ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||    
T  2490801 aggatgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttt 2490900  T
Q  124 tcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagattt 219  Q
    ||||| || |||||||||||||||| |||||| | ||| ||||||  |  | |||||||||||||||||||||||| |||||| ||  ||||||||    
T  2490901 tcatcgtcccggacaaagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagattt 2490996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 2518903 - 2519133
Alignment:
Q  21 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaac 120  Q
    |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |||| || |||||| ||||||||||||| | || |||     
T  2518903 gtaaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaat 2519002  T
Q  121 ttttcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagatttt 220  Q
    ||||||| || |  ||||||||| ||||| | | || ||||    ||| ||  |||||||||| ||||||| |||||||||||||| ||  | | |||||    
T  2519003 ttttcatgttttgagacaaagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagtgcatatttt 2519102  T
Q  221 ggctagaaacttgccgaggtcggcttctcgg 251  Q
    || ||||| || || ||||| | ||||||||    
T  2519103 ggttagaagctcgctgaggttgtcttctcgg 2519133  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 2547221 - 2547354
Alignment:
Q  28 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcat 127  Q
    |||||||||| |||||||||||||||||||| || ||||| | |||||||||| |||||||  | ||||   ||||| |||||||||| ||| |||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  128 cttctcggacaaagctcgcaactcattttcagga 161  Q
    ||| || ||||||||||||||| ||||| |||||    
T  2547321 cttttcagacaaagctcgcaacccatttgcagga 2547354  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 2467212 - 2467416
Alignment:
Q  21 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgat---aaatctcatttgataacaagtgagagacgtta 117  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||| |||   |||    ||| | ||||||||||| || || |    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 2467311  T
Q  118 aacttttcatcttctcggacaaagctcgcaactcattttcaggatccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagat 217  Q
    || |||||||||  | ||| |||||||||||| ||| | ||||| || | |  | ||||||||||| ||| ||||||||||| |||||| ||  ||||||    
T  2467312 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 2467411  T
Q  218 tttgg 222  Q
    |||||    
T  2467412 tttgg 2467416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 2471733 - 2471791
Alignment:
Q  28 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgata 86  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 2471791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  27 atgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 81  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  29 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 81  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 2621540 - 2621413
Alignment:
Q  22 taaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaact 121  Q
    ||||| ||||||||||||||||||||||||||||||| |  ||||| ||||||||||||  |||     | ||| | |||||||||||||| || ||| |    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatt 2621441  T
Q  122 tttcatcttctcggacaaagctcgcaac 149  Q
    |||||| || | ||| ||||||||||||    
T  2621440 tttcatatttttggagaaagctcgcaac 2621413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 2460279 - 2460336
Alignment:
Q  24 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 81  Q
    |||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||    
T  2460279 aggatgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttgt 2460336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 2373598 - 2373547
Alignment:
Q  30 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 81  Q
    ||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttgt 2373547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 12124524 - 12124573
Alignment:
Q  30 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattctt 79  Q
    |||||||| |||||||||||||||||||| || |||||||||||| ||||    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 12124573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 2381761 - 2381645
Alignment:
Q  29 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcatc 128  Q
    ||||||||||||||||||||| |||||  | || || |||| ||| |||||||||||  |  | |||| | ||||||| ||||| || ||| ||||||||    
T  2381761 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagagaggtcaaatttttcatc 2381662  T
Q  129 ttctcggacaaagctcg 145  Q
    || | ||||||||||||    
T  2381661 tttttggacaaagctcg 2381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 2391388 - 2391333
Alignment:
Q  30 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgat 85  Q
    |||||||||||||||||||| |||||| | || ||||||| ||| |||||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgat 2391333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 2625640 - 2625589
Alignment:
Q  18 taagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaaga 69  Q
    ||||| ||| ||||||||||||||||||||||||||||| | || |||||||    
T  2625640 taagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 2393963 - 2393836
Alignment:
Q  28 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaa-cttttca 126  Q
    ||||||||| ||||||||||||| ||||||| || || |||||| ||||||||  |||||   ||||||  ||  | |||||||| || |||  ||||||    
T  2393963 tgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcattt--tagaatgtgagagatgtcaaattttttca 2393866  T
Q  127 tcttctcggacaaagctcgcaactcatttt 156  Q
    |||| | |||||||||||||||| ||||||    
T  2393865 tcttttgggacaaagctcgcaacccatttt 2393836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 2477256 - 2477309
Alignment:
Q  24 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattc 77  Q
    |||||||||||||| || ||||||||||||| ||  || |||||||||||||||    
T  2477256 aggatgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattc 2477309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2546825 - 2546874
Alignment:
Q  32 ttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 81  Q
    ||||||||||||||| ||||||||||| || ||||| | |||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2363206 - 2363162
Alignment:
Q  28 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagat 72  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||||    
T  2363206 tgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 18314763 - 18314718
Alignment:
Q  29 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatca 74  Q
    |||||||||||| ||||||||||||||||| || | ||||||||||    
T  18314763 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  29 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatc 73  Q
    |||||||||||| |||||||| |||||||| || |||||||||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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