View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16089_low_3 (Length: 440)
Name: NF16089_low_3
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 46357204 - 46357610
Alignment:
| Q |
13 |
gagatgaacttgtcttggggtaagaggtctgcggcgtcacaaaagacttctcaacatgtagttgtattggtcacgttatatgaatgaatatcaattannn |
112 |
Q |
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| T |
46357204 |
gagatgaatttgtcttggggtaagaggtctacggcgtcacaaaagacttctcaacatgtagttatattggtcacgttatatgaatgaatatcaatttttt |
46357303 |
T |
|
| Q |
113 |
nnnncaaaggtagatggttttatagcagttgcccattgatcgtatttgaaagaagtttgttgggtttttaggattaaggttttgattcgttaatttctcc |
212 |
Q |
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| T |
46357304 |
ttttcaa-ggtagatggttttatagcagttgcccattgatcgtatttgaaagaagtttgttgggtttttaggattaaggttttgatttgttaatttctcc |
46357402 |
T |
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| Q |
213 |
ttggtttttggactgtttgtgtgtatcctagcttattcttgacttttattagttactaatattgatttaaaatgtggatgggagtgtcgcaacacatgat |
312 |
Q |
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| T |
46357403 |
ttggtttttggactgtttgtgtgtatcctagcttattcttgac-tttattagttactaatattgatttaaaatgtggatgggagtgtcgcaacacatgat |
46357501 |
T |
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| Q |
313 |
cattcaaaattttatcatttgaatgaatattatttttctgaagnnnnnnngatgtagatatataggtgaatatgagcatcgttaaatacattttttattg |
412 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357502 |
cattcaaaattttatcatttgaataaatattatttttctgaagaaaaaaagatgtagatatataggtgaatatgagcatcgttaaatacattttttattg |
46357601 |
T |
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| Q |
413 |
agttcacag |
421 |
Q |
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| T |
46357602 |
agttcacag |
46357610 |
T |
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