View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16089_low_4 (Length: 407)

Name: NF16089_low_4
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16089_low_4
NF16089_low_4
[»] chr5 (9 HSPs)
chr5 (12-391)||(12517040-12517420)
chr5 (229-391)||(11845137-11845303)
chr5 (52-176)||(35470079-35470204)
chr5 (53-163)||(41174123-41174234)
chr5 (44-175)||(3494493-3494625)
chr5 (115-176)||(17904319-17904381)
chr5 (49-176)||(5844331-5844459)
chr5 (96-150)||(28993895-28993949)
chr5 (313-358)||(11855534-11855579)
[»] chr6 (3 HSPs)
chr6 (49-167)||(32604487-32604606)
chr6 (50-104)||(33513910-33513964)
chr6 (114-146)||(1288186-1288218)
[»] chr1 (19 HSPs)
chr1 (50-176)||(50075562-50075689)
chr1 (43-163)||(13383047-13383168)
chr1 (59-175)||(12570107-12570224)
chr1 (43-175)||(47949992-47950125)
chr1 (49-176)||(14149472-14149599)
chr1 (49-172)||(21008171-21008295)
chr1 (43-172)||(36438354-36438484)
chr1 (44-175)||(24439125-24439257)
chr1 (74-167)||(47445975-47446069)
chr1 (41-175)||(47176699-47176835)
chr1 (42-176)||(7789445-7789579)
chr1 (89-175)||(46288797-46288884)
chr1 (74-176)||(23452926-23453027)
chr1 (44-147)||(30321939-30322042)
chr1 (50-175)||(35652485-35652611)
chr1 (128-175)||(47449230-47449278)
chr1 (49-175)||(10987201-10987328)
chr1 (48-110)||(44487705-44487767)
chr1 (74-175)||(30910187-30910293)
[»] chr3 (14 HSPs)
chr3 (49-175)||(33967942-33968069)
chr3 (49-176)||(50302975-50303103)
chr3 (50-176)||(55406866-55406993)
chr3 (43-175)||(34819739-34819872)
chr3 (47-175)||(28958552-28958680)
chr3 (51-171)||(33640930-33641051)
chr3 (59-175)||(47068887-47069004)
chr3 (43-167)||(28309469-28309593)
chr3 (50-175)||(21758272-21758397)
chr3 (44-147)||(12790031-12790137)
chr3 (74-175)||(47068774-47068877)
chr3 (74-175)||(14998753-14998854)
chr3 (88-175)||(52247428-52247516)
chr3 (88-175)||(50164025-50164113)
[»] chr7 (9 HSPs)
chr7 (43-175)||(23031711-23031844)
chr7 (49-172)||(2457899-2458023)
chr7 (74-147)||(44599400-44599473)
chr7 (49-147)||(32650091-32650189)
chr7 (56-150)||(42934135-42934228)
chr7 (43-175)||(3399231-3399363)
chr7 (49-175)||(36783218-36783337)
chr7 (114-175)||(35265365-35265427)
chr7 (115-147)||(34000834-34000866)
[»] chr8 (7 HSPs)
chr8 (50-175)||(40330141-40330267)
chr8 (43-167)||(33274235-33274360)
chr8 (49-175)||(12398039-12398167)
chr8 (43-176)||(12892578-12892706)
chr8 (74-175)||(18310505-18310610)
chr8 (44-175)||(404352-404483)
chr8 (77-175)||(23736938-23737040)
[»] chr2 (16 HSPs)
chr2 (43-175)||(35813791-35813925)
chr2 (74-171)||(28226174-28226272)
chr2 (51-160)||(39958814-39958925)
chr2 (74-175)||(43664802-43664904)
chr2 (43-175)||(43592672-43592797)
chr2 (43-110)||(32839056-32839123)
chr2 (49-145)||(33440816-33440912)
chr2 (57-175)||(4283410-4283529)
chr2 (49-175)||(11252545-11252672)
chr2 (75-175)||(8335231-8335332)
chr2 (53-175)||(3369892-3370015)
chr2 (49-102)||(44722584-44722637)
chr2 (41-132)||(1662340-1662431)
chr2 (53-128)||(2674285-2674360)
chr2 (74-166)||(9886853-9886947)
chr2 (87-172)||(37624996-37625082)
[»] chr4 (11 HSPs)
chr4 (50-175)||(27574590-27574716)
chr4 (43-150)||(29431792-29431899)
chr4 (48-175)||(6942200-6942320)
chr4 (115-175)||(19594461-19594522)
chr4 (88-172)||(48818466-48818551)
chr4 (72-174)||(33977766-33977869)
chr4 (88-175)||(2720533-2720620)
chr4 (114-176)||(40293578-40293641)
chr4 (114-175)||(17354491-17354553)
chr4 (83-172)||(54612607-54612696)
chr4 (74-173)||(39835704-39835804)
[»] scaffold0172 (1 HSPs)
scaffold0172 (53-136)||(26389-26472)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 391
Target Start/End: Original strand, 12517040 - 12517420
Alignment:
Q  12 atgtagttaaatctagggtcttactaacttt----ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatct 107  Q
    ||||||||||||||| ||||||||||||||     ||||| ||||||||||||||||||||    |||||||||||| | ||||||||||||||||||||    
T  12517040 atgtagttaaatctaaggtcttactaacttgtgccctaagggcacaagataagaaactaaa----taaatttaacctaacaaattgttcattcataatct 12517135  T
Q  108 taagagcttaaaaatttatattttcaatacaatatttattgtt-atttctattttaagatccttatcttaacattttcattaaatctaaaactcaataat 206  Q
    ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12517136 taaaagcttaaaaatttatattttcaataaaatatttattgtttatttctattttaagatccttatcttaacattttccttaaatctaaaactcaataat 12517235  T
Q  207 aaaatgaatggttgnnnnnnnncaattaaagcctgtgaattgaagagttatttcaagcacttttactctgaaaatatttactactagtactactagagtc 306  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12517236 aaaatgaatggttggtttttttcaattaaagcctgtgaattgaagagttatttcaagcacttttactctgaaaatatttactactagtactactagagtc 12517335  T
Q  307 ctacctgttgaccctttagggctatgttcttgttcagcatttgcgttgaaaagccacggtttaatatttttctgacaccataact 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12517336 ctacctgttgaccctttagggctatgttcttgttcagcatttgcgttgaaaagccacggtttaatatttttctgacaccataact 12517420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 391
Target Start/End: Complemental strand, 11845303 - 11845137
Alignment:
Q  229 caattaaagcctgtgaattgaagagttatttcaagcacttttactctgaaaatatttactactagtactactagagtcct----acctgttgacccttta 324  Q
    ||||||||||||||||| |||||||||| |||||||  || ||||||||| |||||||||||||||||||||  | | ||    |||| |||||||||||    
T  11845303 caattaaagcctgtgaactgaagagttacttcaagcgattgtactctgaagatatttactactagtactactgtactacttactacctattgacccttta 11845204  T
Q  325 gggctatgttcttgttcagcatttgcgttgaaaagccacggtttaatatttttctgacaccataact 391  Q
     |||| ||| ||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  11845203 tggctttgtccttgttctgcatttacgttgaagagccacggtttaatatttttctgaaaccataact 11845137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 35470204 - 35470079
Alignment:
Q  52 caagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-tt 150  Q
    |||||||||||| |||| ||| |||||||||||| |||||||||||||||||  | ||| ||||||| ||||||| |||||||||||||| |||||| ||    
T  35470204 caagataagaaattaaataaagaaatttaaccttgaaaattgttcattcatacccgtaaaagcttaataatttatcttttcaatacaatacttattgttt 35470105  T
Q  151 atttctattttaagatccttatctta 176  Q
    | |||||||||||||| |||||||||    
T  35470104 aattctattttaagattcttatctta 35470079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 41174123 - 41174234
Alignment:
Q  53 aagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-gtta 151  Q
    |||||||||||||||| | | |||||||||||| |||||||| ||||||||| ||||| | |||||||| |||| ||||||||||||||||||||  |||    
T  41174123 aagataagaaactaaatataaaaatttaaccttgaaaattgtacattcataaacttaaaatcttaaaaacttattttttcaatacaatatttattattta 41174222  T
Q  152 tttctattttaa 163  Q
     |||||||||||    
T  41174223 attctattttaa 41174234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 3494625 - 3494493
Alignment:
Q  44 taagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatt 143  Q
    |||| |||||| |||| |||||||| | | |||||| | ||| |||||||| ||||||||||||||| | ||||||||||||| |||| ||||||| |||    
T  3494625 taagggcacaaaataaaaaactaaatataaaaatttgatcttgaaaattgtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatt 3494526  T
Q  144 ta-ttgttatttctattttaagatccttatctt 175  Q
    || || ||| ||| ||||| |||||||||||||    
T  3494525 tattttttaattccatttttagatccttatctt 3494493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 17904381 - 17904319
Alignment:
Q  115 ttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatccttatctta 176  Q
    |||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  17904381 ttaaaaatttatcttttcaatacaatttttattgtttaattctattttaagatccttatctta 17904319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 5844331 - 5844459
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-tt 147  Q
    ||||||||||||||||||||   | |||||||| ||||||||| || || ||| ||||||||    || |||| ||||||||||||| ||  ||||| ||    
T  5844331 gcacaagataagaaactaaatgtagaaatttaatcttaaaaatcgtgcaatcacaatcttaaagattttaaaacttatattttcaatgcagcatttattt 5844430  T
Q  148 gttatttctattttaagatccttatctta 176  Q
     ||| ||||||||| || |||||||||||    
T  5844431 tttaattctatttttaggtccttatctta 5844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 28993949 - 28993895
Alignment:
Q  96 cattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgtt 150  Q
    ||||||||| || || || ||||||| |||||||| |||||||||||||||||||    
T  28993949 cattcataacctgaaaagtttaaaaacttatatttacaatacaatatttattgtt 28993895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 11855579 - 11855534
Alignment:
Q  313 gttgaccctttagggctatgttcttgttcagcatttgcgttgaaaa 358  Q
    |||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  11855579 gttgactctttatggctgtgttcttgttctgcatttgcgttgaaaa 11855534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 32604487 - 32604606
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    |||||||||||||||||||| ||| ||||||||| || |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  32604487 gcacaagataagaaactaaataaagaaatttaacattgaaaattgtgcattcataatcctaacagcttaaaaatttatattttcaatacaatatttattg 32604586  T
Q  149 -ttatttctattttaagatc 167  Q
     |||||||||||||||||||    
T  32604587 tttatttctattttaagatc 32604606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 33513910 - 33513964
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataa 104  Q
    |||||||||||||||||||   | ||||||||||||||||||||| |||||||||    
T  33513910 cacaagataagaaactaaatgtagaaatttaaccttaaaaattgtgcattcataa 33513964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 1288218 - 1288186
Alignment:
Q  114 cttaaaaatttatattttcaatacaatatttat 146  Q
    |||||||| ||||||||||||||||||||||||    
T  1288218 cttaaaaacttatattttcaatacaatatttat 1288186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 50075562 - 50075689
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg- 148  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||| || ||||||| |||| |||||||  ||||||||||||     
T  50075562 cacaagataagaaattaaataaagaaatttaaccttaaaaattgtgcattcataatcttaaaagtttaaaaagttatcttttcaacgcaatatttattgt 50075661  T
Q  149 ttatttctattttaagatccttatctta 176  Q
    ||||||||||||||| ||| ||||||||    
T  50075662 ttatttctattttaaaatctttatctta 50075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 13383168 - 13383047
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| |||||||||||||||||||| ||| ||||||||| |  |||||||| ||||||||||||||| || ||||||| ||||||||| ||||||||||    
T  13383168 ctaagggcacaagataagaaactaaagaaagaaatttaacttcgaaaattgtgcattcataatcttaaaagtttaaaaacttatatttttaatacaatat 13383069  T
Q  143 ttattg-ttatttctattttaa 163  Q
    |||||| |||||||||||||||    
T  13383068 ttattgtttatttctattttaa 13383047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 12570224 - 12570107
Alignment:
Q  59 agaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-ttatttcta 157  Q
    |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| || | ||||| ||||||||| |||||||||||||||| || ||||||    
T  12570224 agaaactaaataaagaaatttaaccttgaaaattgtgcattcataatcttaaaagttcaaaaacttatatttttaatacaatatttattgtttgtttcta 12570125  T
Q  158 ttttaagatccttatctt 175  Q
    |||||||||| |||||||    
T  12570124 ttttaagatctttatctt 12570107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 47950125 - 47949992
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| ||||||||||||||||||||   | |||||||| |||  ||||||| ||||||||| ||||| |||||||||| || | |||||||| ||||||    
T  47950125 ctaagggcacaagataagaaactaaatgtagaaatttaatcttgcaaattgtgcattcataaccttaaaagcttaaaaacttgtcttttcaatgcaatat 47950026  T
Q  143 tta-ttgttatttctattttaagatccttatctt 175  Q
    ||| || ||| |||||||||||||||||||||||    
T  47950025 ttattttttaattctattttaagatccttatctt 47949992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 14149599 - 14149472
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    |||||||||||||||||||| ||| ||||||||| || ||||||||  |||||| | ||||| ||||| ||||||| | |||||||||||||| ||||||    
T  14149599 gcacaagataagaaactaaataaagaaatttaactttgaaaattgtgtattcatgaccttaaaagctt-aaaatttttcttttcaatacaataattattg 14149501  T
Q  149 -ttatttctattttaagatccttatctta 176  Q
     ||| |||||||||||||| |||||||||    
T  14149500 tttacttctattttaagattcttatctta 14149472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 21008171 - 21008295
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt- 147  Q
    |||||||||||||||||||| ||| || |||||| || ||||| || ||||||  | ||||| | |||||||| |||| ||||||||||||||||||||     
T  21008171 gcacaagataagaaactaaataaagaattttaactttgaaaatcgtgcattcaataccttaaaaacttaaaaagttatcttttcaatacaatatttatta 21008270  T
Q  148 gttatttctattttaagatccttat 172  Q
     ||| |||||||||||||| |||||    
T  21008271 tttaattctattttaagattcttat 21008295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 36438354 - 36438484
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| ||||||||||||||||||||   | ||| |||| |||  ||||| | ||||||||| ||||| | ||| |||| ||||||||||||| ||||||    
T  36438354 ctaagggcacaagataagaaactaaatgtagaaacttaatcttggaaattttgcattcataaccttaaaaacttcaaaacttatattttcaatgcaatat 36438453  T
Q  143 ttattgtt-atttctattttaagatccttat 172  Q
    ||||| || | ||||||||||||||||||||    
T  36438454 ttatttttaaattctattttaagatccttat 36438484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 24439257 - 24439125
Alignment:
Q  44 taagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatt 143  Q
    |||| ||||| ||||||||||||||   | ||||||||  || |||||||| ||||||||||||||| || ||||||| |||| |||| |||||||||||    
T  24439257 taagggcacacgataagaaactaaatgtaaaaatttaattttgaaaattgtgcattcataatcttaaaagtttaaaaacttatttttttaatacaatatt 24439158  T
Q  144 ta-ttgttatttctattttaagatccttatctt 175  Q
    || || ||| |||||| || |||| ||||||||    
T  24439157 tattttttaattctatatttagattcttatctt 24439125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 47445975 - 47446069
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-gttatttctattttaagatc 167  Q
    ||||||||  ||||||||||| |||| |||||||||| || | |||||||||| ||||||||||||||||||||  ||| ||||||||| |||||    
T  47445975 aaatttaattttaaaaattgtgcatttataatcttaaaagttaaaaaatttatcttttcaatacaatatttattatttaattctatttttagatc 47446069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 47176699 - 47176835
Alignment:
Q  41 ttctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaat 140  Q
    ||||||| | |||||||| |||| |||||  |  |||||||  ||||||||||| ||||||||||||| | ||  |||||| | ||||||||||| ||||    
T  47176699 ttctaagggtacaagatacgaaattaaacgtagtaatttaattttaaaaattgtgcattcataatctttaaagtataaaaactcatattttcaatgcaat 47176798  T
Q  141 atttattgtt--atttctattttaagatccttatctt 175  Q
    ||||||| ||  | ||||||||| |||||||||||||    
T  47176799 atttattttttaaattctatttttagatccttatctt 47176835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 7789579 - 7789445
Alignment:
Q  42 tctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaata 141  Q
    |||||| ||||||||||||||||||||   | || ||||| ||| |||||||| |||| ||||  | || | ||||||||||||| |||||||| |||||    
T  7789579 tctaagggcacaagataagaaactaaatgtaaaagtttaatcttgaaaattgtgcatttataacttcaaaatcttaaaaatttat-ttttcaatgcaata 7789481  T
Q  142 ttta-ttgttatttctattttaagatccttatctta 176  Q
    |||| || ||| ||| ||||||||||| ||||||||    
T  7789480 tttattttttaattccattttaagatcattatctta 7789445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 46288884 - 46288797
Alignment:
Q  89 aattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatccttatctt 175  Q
    |||||| ||||||||| ||||| | |||||||| |||| || |||||| ||||||||||| ||| ||||||||| |||||||||||||    
T  46288884 aattgtacattcataaccttaaaaacttaaaaacttattttatcaatataatatttattgtttaattctattttgagatccttatctt 46288797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 23452926 - 23453027
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgttat-ttctattttaagatccttat 172  Q
    ||||||||| || |||||||  |||||||||  |||| | ||||||||   ||||||||||||||||||||||| || | ||||||||||||||| ||||    
T  23452926 aaatttaactttgaaaattgcacattcataacattaaaatcttaaaaac--atattttcaatacaatatttattattttattctattttaagatctttat 23453023  T
Q  173 ctta 176  Q
    ||||    
T  23453024 ctta 23453027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 30321939 - 30322042
Alignment:
Q  44 taagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatt 143  Q
    ||||| |||||||||||||||||||   | ||| |||| |||||||||||| ||||   || ||||| | |||||||| |||| |||||||| |||||||    
T  30321939 taagatcacaagataagaaactaaatgtagaaacttaatcttaaaaattgtgcattttaaaccttaaaatcttaaaaacttatcttttcaatgcaatatt 30322038  T
Q  144 tatt 147  Q
    ||||    
T  30322039 tatt 30322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 35652611 - 35652485
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-g 148  Q
    |||||||||||||||||||   | ||| ||||| || |||||||| |||||  || ||||| | |||||||| |||| |||||||| |||||||||||      
T  35652611 cacaagataagaaactaaatgtagaaacttaactttgaaaattgtgcattctaaaccttaacaacttaaaaacttatcttttcaatgcaatatttattat 35652512  T
Q  149 ttatttctattttaagatccttatctt 175  Q
    ||| ||  ||||||||||| |||||||    
T  35652511 ttaatttaattttaagatctttatctt 35652485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 47449230 - 47449278
Alignment:
Q  128 ttttcaatacaatatttatt-gttatttctattttaagatccttatctt 175  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  47449230 ttttcaatacaatatttattagttaattctattttaagattcttatctt 47449278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 10987328 - 10987201
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    ||||||||||||||||||||   | ||| |||||||| |||||||| ||||   ||  |||| | |||||||| |||| |||||||| |||||||||||     
T  10987328 gcacaagataagaaactaaatgtagaaacttaaccttgaaaattgtgcattttaaactttaaaatcttaaaaacttatcttttcaatgcaatatttatta 10987229  T
Q  149 tt-atttctattttaagatccttatctt 175  Q
    ||    |||||||||||||| |||||||    
T  10987228 ttggaatctattttaagatctttatctt 10987201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 44487767 - 44487705
Alignment:
Q  48 agcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaa 110  Q
    |||||||||||||||||||||     |||||||| |||| ||||||| |||||||||||||||    
T  44487767 agcacaagataagaaactaaatgtcgaaatttaatcttagaaattgtgcattcataatcttaa 44487705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 30910293 - 30910187
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaa----tttatattttcaatacaatatttattgtt-atttctattttaagatcc 168  Q
    |||||||| |||||||||||| |||||| ||| |||| ||||||||||    ||| | |||||||| ||| ||||||| || | ||||||||| |||| |    
T  30910293 aaatttaatcttaaaaattgtgcattcaaaattttaaaagcttaaaaactttttttttttttcaatccaacatttatttttcaattctatttttagattc 30910194  T
Q  169 ttatctt 175  Q
    |||||||    
T  30910193 ttatctt 30910187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 33968069 - 33967942
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    |||||||||||||||| ||| ||| ||||||||| ||  ||||||| ||||||||| ||||| | |||||||| ||||||||| ||||||||||||||||    
T  33968069 gcacaagataagaaacaaaataaagaaatttaacattggaaattgtgcattcataaccttaaaaacttaaaaagttatatttttaatacaatatttattg 33967970  T
Q  149 -ttatttctattttaagatccttatctt 175  Q
     ||||||||||| |||||||||||||||    
T  33967969 tttatttctattataagatccttatctt 33967942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 50303103 - 50302975
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    |||||| ||||||||| ||| ||| ||||||||||||  ||||||| ||||||||||||||| || | ||||| ||||||||||||||||||||||||||    
T  50303103 gcacaatataagaaaccaaataaagaaatttaaccttggaaattgtgcattcataatcttaaaagttcaaaaacttatattttcaatacaatatttattg 50303004  T
Q  149 -ttatttctattttaagatccttatctta 176  Q
     || |||||||||||||||  ||||||||    
T  50303003 tttgtttctattttaagatatttatctta 50302975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 55406866 - 55406993
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg- 148  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||| |||| |||| ||||| | ||| |||| |||| ||| |||||||||||||| ||     
T  55406866 cacaagataagaaactaaataaaaaaatttaactttaaaaattgtgcatttataaccttaaaaactttaaaacttatttttccaatacaatatttagtgt 55406965  T
Q  149 ttatttctattttaagatccttatctta 176  Q
    ||| ||||||||||||||||||||||||    
T  55406966 ttaattctattttaagatccttatctta 55406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 34819872 - 34819739
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| ||||||||||| |||||||| ||| |||||| | ||| |||||||| ||||||||| ||||| || | |||||||||| ||||||||||||| |    
T  34819872 ctaagggcacaagataaaaaactaaataaagaaatttgatcttgaaaattgtgcattcataaccttaaaagttaaaaaatttatcttttcaatacaattt 34819773  T
Q  143 ttattg-ttatttctattttaagatccttatctt 175  Q
    |||||| ||| |||||||||||||| ||||||||    
T  34819772 ttattgtttaattctattttaagattcttatctt 34819739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 28958552 - 28958680
Alignment:
Q  47 gagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttat 146  Q
    |||||||||||||||||||||| ||| ||||||||| || |||| |||  |||||| | ||||| ||||| ||||||||| |||||||||||||| ||||    
T  28958552 gagcacaagataagaaactaaataaagaaatttaactttgaaaagtgtatattcatgaccttaaaagctt-aaaatttatcttttcaatacaataattat 28958650  T
Q  147 tg-ttatttctattttaagatccttatctt 175  Q
    || ||| |||| ||||||||||||||||||    
T  28958651 tgtttacttctgttttaagatccttatctt 28958680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 33640930 - 33641051
Alignment:
Q  51 acaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-t 149  Q
    |||||||||||||| ||| ||| ||||||||  ||| ||||| | |||||||||  |||| | |||||||| |||||||||||||||||||||||||| |    
T  33640930 acaagataagaaaccaaataaagaaatttaattttagaaattttgcattcataactttaaaatcttaaaaacttatattttcaatacaatatttattgtt 33641029  T
Q  150 tatttctattttaagatcctta 171  Q
    || |||||||||||||||||||    
T  33641030 taattctattttaagatcctta 33641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 47069004 - 47068887
Alignment:
Q  59 agaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgtt-atttcta 157  Q
    ||||| |||| ||| ||||||||| ||||||||||| |||||||||  |||| | |||||||| |||| |||| ||||||||||||||| || |||||||    
T  47069004 agaaattaaataaagaaatttaacattaaaaattgtgcattcataactttaaaaacttaaaaaattatctttttaatacaatatttattattgatttcta 47068905  T
Q  158 ttttaagatccttatctt 175  Q
    || |||||||||||||||    
T  47068904 ttctaagatccttatctt 47068887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 28309593 - 28309469
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaat-ttatattttcaatacaata 141  Q
    ||||| ||||||||||| ||||||||   | ||||||||| ||||||||||| ||| ||||| ||||| || |||||||  |||| ||||||||||||||    
T  28309593 ctaagggcacaagataaaaaactaaatgtaaaaatttaactttaaaaattgtacatacataaccttaa-agattaaaaaacttattttttcaatacaata 28309495  T
Q  142 tttattgttatttctattttaagatc 167  Q
    |||||| ||| |||||||||||||||    
T  28309494 tttatttttagttctattttaagatc 28309469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 21758397 - 21758272
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgt 149  Q
    |||||||||||||| |||| ||| ||||||||| ||  ||||| | ||||||  | || || || ||||| | |||  |||| ||||||||||||||| |    
T  21758397 cacaagataagaaattaaataaagaaatttaactttggaaattatgcattcaatacctcaaaaggttaaatagttaactttttaatacaatatttattat 21758298  T
Q  150 tatttctattttaagatccttatctt 175  Q
    || |||||||||||||| ||||||||    
T  21758297 taattctattttaagattcttatctt 21758272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 12790031 - 12790137
Alignment:
Q  44 taagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgt---tcattcataatcttaagagcttaaaaatttatattttcaatacaat 140  Q
    |||||||||||||||||||| ||||   | ||||||||| ||  |||||||   | |||||||| || || | ||||||||||||| |||||||||||||    
T  12790031 taagagcacaagataagaaattaaatgtagaaatttaactttgtaaattgtgtattattcataacctaaaaatcttaaaaatttatcttttcaatacaat 12790130  T
Q  141 atttatt 147  Q
    |||||||    
T  12790131 atttatt 12790137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 47068877 - 47068774
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaat-ttatattttcaatacaatatttattgtt-atttctattttaagatcctta 171  Q
    ||||||||| || |||||||| ||||||||||  ||| | ||||||||  |||| |||| |||| |||||||||| || ||||||||| |||||||||||    
T  47068877 aaatttaacattgaaaattgtgcattcataattgtaaaaacttaaaaaaattatctttttaatataatatttattatttatttctattctaagatcctta 47068778  T
Q  172 tctt 175  Q
    ||||    
T  47068777 tctt 47068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 14998753 - 14998854
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttat 172  Q
    |||||||| |||||||||||| ||||||||||||||| |  ||||||| || | ||||||||| ||||| || || ||| |||||||||| ||| |||||    
T  14998753 aaatttaatcttaaaaattgtacattcataatcttaaaaatttaaaaactt-tcttttcaatataatatatattttttaattctattttatgattcttat 14998851  T
Q  173 ctt 175  Q
    |||    
T  14998852 ctt 14998854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 52247516 - 52247428
Alignment:
Q  88 aaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatccttatctt 175  Q
    ||||||| |||||||| |||||| ||| |||| | || | |||| |||||||||||||||| ||| ||||||||||| ||| |||||||    
T  52247516 aaattgtgcattcatattcttaaaagcctaaatacttgtctttttaatacaatatttattgtttaattctattttaaaatctttatctt 52247428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 50164025 - 50164113
Alignment:
Q  88 aaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttatctt 175  Q
    ||||||| |||||||||| | || | ||||||| ||||| |||||||||||| ||||| || ||| ||| | ||| |||||||||||||    
T  50164025 aaattgtgcattcataatttgaaaaacttaaaagtttatcttttcaatacaacatttattttttaattccacttttagatccttatctt 50164113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 23031711 - 23031844
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| |||||||||||||||||||| ||| ||||| ||| || |||||||| |||||| || ||||| | ||||||||||||| |||| ||||||||||    
T  23031711 ctaagtgcacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaaccttaaaaacttaaaaatttatctttttaatacaatat 23031810  T
Q  143 ttattgtt-atttctattttaagatccttatctt 175  Q
    |||||||| | ||||||||||||||| |||||||    
T  23031811 ttattgttcaattctattttaagatcattatctt 23031844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 2457899 - 2458023
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    |||||||||||||||||||| ||| ||||||||| ||   |||||| ||||||||| ||||| ||||||| |  |||| |||||||||||||||| ||||    
T  2457899 gcacaagataagaaactaaataaagaaatttaacattgggaattgtgcattcataaccttaaaagcttaagagcttatcttttcaatacaatattgattg 2457998  T
Q  149 -ttatttctattttaagatccttat 172  Q
     ||| ||||||||||||||||||||    
T  2457999 tttaattctattttaagatccttat 2458023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 44599473 - 44599400
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt 147  Q
    ||||||||||||||||||||| |||| |||| ||||| | |||||||| |||||||||||||||||||||||||    
T  44599473 aaatttaaccttaaaaattgtgcatttataaccttaaaatcttaaaaacttatattttcaatacaatatttatt 44599400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 32650189 - 32650091
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt 147  Q
    |||||||||||||||||||| | | |||||| | |||  ||||||| ||| ||||||||||| | ||||||||||||| |||||||||||| |||||||    
T  32650189 gcacaagataagaaactaaatatagaaatttgatcttggaaattgtgcatgcataatcttaaaaacttaaaaatttatcttttcaatacaacatttatt 32650091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 42934228 - 42934135
Alignment:
Q  56 ataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgtt 150  Q
    ||||||||||||| ||| ||||||||| || |||||||| |||||||||  |||| | |||||||| |||| |||| ||||||||||||||||||    
T  42934228 ataagaaactaaataaa-aaatttaacattgaaaattgtacattcataacattaaaaacttaaaaagttatttttttaatacaatatttattgtt 42934135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 3399363 - 3399231
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| ||||||||||| |||| | ||  | ||| |||| |||| ||||| | |||||| |||||||| || ||||||| |||| |||||||| ||||||    
T  3399363 ctaagggcacaagataaaaaacaatacgtagaaacttaatcttagaaattttgcattca-aatcttaaaagtttaaaaacttatgttttcaatgcaatat 3399265  T
Q  143 ttattgtt-atttctattttaagatccttatctt 175  Q
    ||||| || ||||||||||| |||||||||||||    
T  3399264 ttatttttcatttctatttttagatccttatctt 3399231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 36783218 - 36783337
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt- 147  Q
    |||||||||||||||||||| ||| ||||||||| ||| ||||||| |||||        || | || ||||| |||| ||||||||||||||||||||     
T  36783218 gcacaagataagaaactaaataaagaaatttaactttagaaattgtgcattc--------aatacctcaaaaagttatcttttcaatacaatatttatta 36783309  T
Q  148 gttatttctattttaagatccttatctt 175  Q
     ||| |||||||||||||| ||||||||    
T  36783310 tttaattctattttaagattcttatctt 36783337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 35265365 - 35265427
Alignment:
Q  114 cttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatccttatctt 175  Q
    |||||||| |||||||||  ||| ||||||||||| |||||| |||| |||||||||||||||    
T  35265365 cttaaaaacttatatttttgataaaatatttattgtttatttttattataagatccttatctt 35265427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 34000866 - 34000834
Alignment:
Q  115 ttaaaaatttatattttcaatacaatatttatt 147  Q
    ||||||||||||||||||||||||| |||||||    
T  34000866 ttaaaaatttatattttcaatacaaaatttatt 34000834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 40330267 - 40330141
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-g 148  Q
    ||||| |||| |||||||| ||||||||| ||| ||||||||||| ||||||||||||||| |  ||||||| |||||||||||||||||||||||||      
T  40330267 cacaaaataaaaaactaaataaataaattcaactttaaaaattgtgcattcataatcttaaaaatttaaaaacttatattttcaatacaatatttattat 40330168  T
Q  149 ttatttctattttaagatccttatctt 175  Q
    |||||| |||||||| ||| |||||||    
T  40330167 ttatttttattttaatatcattatctt 40330141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 33274235 - 33274360
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| ||||||||||||||||||||   | ||| ||||||||||||||||| ||||   || ||||| | ||||||||||||| |||||||| ||||||    
T  33274235 ctaagggcacaagataagaaactaaatgtaaaaacttaaccttaaaaattgtgcattttaaaccttaaaatcttaaaaatttatcttttcaatgcaatat 33274334  T
Q  143 ttatt-gttatttctattttaagatc 167  Q
    |||||  |||||||||||||||||||    
T  33274335 ttattatttatttctattttaagatc 33274360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 12398039 - 12398167
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaa-tttatattttcaatacaatatttatt 147  Q
    |||||||||||||||||||| ||| ||||||||||||  ||||||| ||||||||| ||||| |||||||||| || |  |||||||||||  |||||||    
T  12398039 gcacaagataagaaactaaaaaaagaaatttaaccttggaaattgtacattcataaccttaaaagcttaaaaacttaactttttcaatacataatttatt 12398138  T
Q  148 -gttatttctattttaagatccttatctt 175  Q
      ||| || ||||||||||||||||||||    
T  12398139 atttaattatattttaagatccttatctt 12398167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 12892578 - 12892706
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    |||||||||||||||||||||||||| ||| || ||||       ||||| | ||||||||| ||||| | |||||||| |||||||||||||| |||||    
T  12892578 ctaagagcacaagataagaaactaaataaagaattttag------aaattatgcattcataaccttaaaaacttaaaaacttatattttcaatataatat 12892671  T
Q  143 ttatt-gttatttctattttaagatccttatctta 176  Q
    |||||  ||| || |||||||| ||||||||||||    
T  12892672 ttattatttaattttattttaaaatccttatctta 12892706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 18310505 - 18310610
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaa---tatttattgt-tatttctattttaagatcct 169  Q
    |||||||| |||| ||||||| |||||||||  |||| || ||||||| |||| ||||||||||||   |||||||||| || ||||||||||||||| |    
T  18310505 aaatttaatcttagaaattgtacattcataactttaaaagattaaaaacttatcttttcaatacaatattatttattgtctaattctattttaagatctt 18310604  T
Q  170 tatctt 175  Q
    ||||||    
T  18310605 tatctt 18310610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 404352 - 404483
Alignment:
Q  44 taagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatt 143  Q
    |||||| |||| |||||||| ||||   | |||||||| ||||||||||||  ||| ||||   ||| | ||||||||||||| ||| ||||||||||||    
T  404352 taagagtacaaaataagaaattaaatcgaaaaatttaatcttaaaaattgtatatttataactgtaaaaacttaaaaatttatcttt-caatacaatatt 404450  T
Q  144 tattg-ttatttctattttaagatccttatctt 175  Q
    ||||| ||| ||||||||||||||  |||||||    
T  404451 tattgtttaattctattttaagatatttatctt 404483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 23736938 - 23737040
Alignment:
Q  77 tttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaa---tatttattg-ttatttctattttaagatccttat 172  Q
    ||||| |||||||||||| |||||||||  |||| || ||||||| |||| ||||||||| ||   ||||||||| ||| ||||||||||||||| ||||    
T  23736938 tttaatcttaaaaattgtgcattcataactttaaaagattaaaaacttatcttttcaatataatattatttattgtttaattctattttaagatctttat 23737037  T
Q  173 ctt 175  Q
    |||    
T  23737038 ctt 23737040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 35813925 - 35813791
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaattta-tattttcaatacaata 141  Q
    ||||| ||| |||||||||||||||| ||| |||||| |||||  ||||||| ||||||||||||||| || | ||||| ||| ||||||||||| ||||    
T  35813925 ctaagggcaaaagataagaaactaaataaagaaatttgaccttggaaattgtgcattcataatcttaaaagttaaaaaacttactattttcaatataata 35813826  T
Q  142 tttattg-ttatttctattttaagatccttatctt 175  Q
    ||||||| ||||||||||||||||||| |||||||    
T  35813825 tttattgtttatttctattttaagatctttatctt 35813791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 28226174 - 28226272
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatcctta 171  Q
    |||||||| |||| |||||||  |||||||||||||| || ||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||||    
T  28226174 aaatttaaacttagaaattgtgtattcataatcttaaaagtttaaaaacttatcttttcaatataatatttattgtttaattctattttaagatcctta 28226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 39958814 - 39958925
Alignment:
Q  51 acaagataagaaactaaacaaataaat-ttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg- 148  Q
    |||||||||||||||||| ||| |||  ||||| |||||||||||  |||||| | ||||| ||||||||||| ||| |||||||||||||||||| ||     
T  39958814 acaagataagaaactaaataaaaaaaaattaactttaaaaattgtgtattcatgaccttaaaagcttaaaaatatatcttttcaatacaatatttagtgt 39958913  T
Q  149 ttatttctattt 160  Q
    ||||||||||||    
T  39958914 ttatttctattt 39958925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 43664802 - 43664904
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttat 172  Q
    |||||||| |||||||||||| |||||| |||||||| || ||||||| |||||||||||||  |||||||| || ||| ||||||||| ||||| ||||    
T  43664802 aaatttaatcttaaaaattgtgcattcaaaatcttaaaagtttaaaaacttatattttcaatgtaatatttattttttaattctatttttagatcattat 43664901  T
Q  173 ctt 175  Q
    |||    
T  43664902 ctt 43664904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 43592672 - 43592797
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| |||||||||||||||||||| ||| ||| ||||||||  ||||||| ||||||||        | |||||||| |||| |||||||||||||||    
T  43592672 ctaagggcacaagataagaaactaaataaagaaagttaaccttggaaattgtgcattcata--------accttaaaaacttatcttttcaatacaatat 43592763  T
Q  143 ttattg-ttatttctattttaagatccttatctt 175  Q
    |||||| ||  ||||||||||||||| |||||||    
T  43592764 ttattgtttcattctattttaagatctttatctt 43592797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 32839056 - 32839123
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaa 110  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||| |||||    
T  32839056 ctaagggcacaagataagaaactaaataaagaaatttaaccttagaaattgtgcattcataaccttaa 32839123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 33440816 - 33440912
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta 145  Q
    |||||| |||||||| |||| ||| ||||||||| || | |||||| |||| |||| ||||| | |||||||| |||| ||||||||||||||||||    
T  33440816 gcacaatataagaaaataaataaagaaatttaacattgagaattgtgcatttataaccttaaaatcttaaaaacttatcttttcaatacaatattta 33440912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 4283410 - 4283529
Alignment:
Q  57 taagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-gttatttc 155  Q
    ||||||||||||   | ||||||||| ||||||||||| | ||||||| ||||| | |||||||| ||||||||| |||| ||||||||||  ||| |||    
T  4283410 taagaaactaaatgtagaaatttaactttaaaaattgtgctttcataaccttaaaatcttaaaaacttatatttttaatataatatttattatttaattc 4283509  T
Q  156 tattttaagatccttatctt 175  Q
    ||||| |||||  |||||||    
T  4283510 tatttcaagatatttatctt 4283529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 11252545 - 11252672
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg 148  Q
    ||||||||||||||||||||      ||||||| |||| |||||||  |||||||||||||| || || |||| |||| |||||||||||  |||||||     
T  11252545 gcacaagataagaaactaaatgtggtaatttaatcttagaaattgtgaattcataatcttaaaagtttcaaaacttatcttttcaatacaccatttattt 11252644  T
Q  149 t-tatttctattttaagatccttatctt 175  Q
    | || ||||||||| |||||||||||||    
T  11252645 tctaattctatttttagatccttatctt 11252672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 8335231 - 8335332
Alignment:
Q  75 aatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttatc 173  Q
    |||||||  ||||||||| | |||||||||| |||| || ||||||| ||||||||||||| ||| ||||| || ||| ||||||||| |||||||| ||    
T  8335231 aatttaattttaaaaattatgcattcataatgttaaaagtttaaaaacttatattttcaatgcaacatttattttttaattctatttttagatccttctc 8335330  T
Q  174 tt 175  Q
    ||    
T  8335331 tt 8335332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 3369892 - 3370015
Alignment:
Q  53 aagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgt-ta 151  Q
    ||||||||||||||||   | ||||| || |||||||||||| ||||||||||||||| | ||| |||| ||||  ||||||| ||| ||||||| |  |    
T  3369892 aagataagaaactaaatgtagaaattcaatcttaaaaattgtgcattcataatcttaacaactttaaaacttatcatttcaatgcaacatttattttgaa 3369991  T
Q  152 tttctattttaagatccttatctt 175  Q
     ||||||||| ||||| |||||||    
T  3369992 attctatttttagatcattatctt 3370015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 44722637 - 44722584
Alignment:
Q  49 gcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcat 102  Q
    |||||| ||||||||||||| ||| |||||||||| |||||||||| |||||||    
T  44722637 gcacaaaataagaaactaaataaagaaatttaaccataaaaattgtgcattcat 44722584  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 1662431 - 1662340
Alignment:
Q  41 ttctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttc 132  Q
    ||||||||||||||||||| |||||||| ||| ||||||||| ||  ||||||| | ||||  | || || |||||||||| |||| |||||    
T  1662431 ttctaagagcacaagataaaaaactaaataaaaaaatttaactttggaaattgtgctttcaatacctcaaaagcttaaaaagttatcttttc 1662340  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 2674285 - 2674360
Alignment:
Q  53 aagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatat 128  Q
    ||||||||||||||||   | ||||||||  || |||||||| ||||||||||||||| || ||||| ||||||||    
T  2674285 aagataagaaactaaatgtagaaatttaatattgaaaattgtgcattcataatcttaaaagtttaaacatttatat 2674360  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 9886947 - 9886853
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagct-taaaaatttatattttcaatacaatatttatt-gttatttctattttaagat 166  Q
    |||||||||||| |||||||| |||||||||  |||| | ||  ||||| |||| |||||||||||||||| |||  ||| ||||||||||||||    
T  9886947 aaatttaaccttgaaaattgtgcattcataacattaaaacctgaaaaaacttatcttttcaatacaatattaattatttaattctattttaagat 9886853  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 37624996 - 37625082
Alignment:
Q  87 aaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgtt-atttctattttaagatccttat 172  Q
    |||||||| ||||||  ||||||| || || |||| |||||||||||||| || ||||||| || ||||| |||||||| |||||||    
T  37624996 aaaattgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatttttaatttccattttaagctccttat 37625082  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 27574716 - 27574590
Alignment:
Q  50 cacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt-g 148  Q
    |||||||||||||||| |||| | ||||||||| ||||||||||| |||||||||  |||| | ||||||| ||||| |||||||| |||||||||||      
T  27574716 cacaagataagaaactgaacatagaaatttaactttaaaaattgtgcattcataactttaaaatcttaaaattttatcttttcaattcaatatttattat 27574617  T
Q  149 ttatttctattttaagatccttatctt 175  Q
    ||| ||||||||||||||| |||||||    
T  27574616 ttaattctattttaagatctttatctt 27574590  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 29431792 - 29431899
Alignment:
Q  43 ctaagagcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatat 142  Q
    ||||| |||||||||||||||||||| ||| ||||| ||| || |||||||| |||||| ||  |||| | |||||||||||||  ||||||||||||||    
T  29431792 ctaagggcacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaactttaaaaacttaaaaatttatcatttcaatacaatat 29431891  T
Q  143 ttattgtt 150  Q
    ||||||||    
T  29431892 ttattgtt 29431899  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 6942200 - 6942320
Alignment:
Q  48 agcacaagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttatt 147  Q
    |||||||||||| || ||||| ||| ||||||||| || | |||||| |||||||||||||||        ||| |||| ||||||||||||||||||||    
T  6942200 agcacaagataacaagctaaataaagaaatttaactttgagaattgtgcattcataatcttaa--------aaacttatcttttcaatacaatatttatt 6942291  T
Q  148 g-ttatttctattttaagatccttatctt 175  Q
    | ||| || |||||||||||| |||||||    
T  6942292 gtttaattttattttaagatctttatctt 6942320  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 19594461 - 19594522
Alignment:
Q  115 ttaaaaatttatattttcaatacaatatttattgt-tatttctattttaagatccttatctt 175  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||||||||| ||||||    
T  19594461 ttaaaaacttatcttttcaatacaatatttattgtataattctattttaagatccctatctt 19594522  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 48818466 - 48818551
Alignment:
Q  88 aaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattg-ttatttctattttaagatccttat 172  Q
    ||||||| |||||||||  |||| || ||||||| |||| |||||||| || ||||||||| ||| ||||||||||||||||||||    
T  48818466 aaattgtgcattcataacattaaaagtttaaaaacttatcttttcaatgcattatttattgtttaattctattttaagatccttat 48818551  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 33977766 - 33977869
Alignment:
Q  72 ataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatcctt 170  Q
    |||| ||||| |||||||||| | ||||||||   |||| || |||||||||||| |||||||| ||||||||| || ||| || |||||||| ||||||    
T  33977766 ataagtttaatcttaaaaattatacattcataccattaaaagtttaaaaatttatcttttcaatgcaatatttattttttaattatattttaatatcctt 33977865  T
Q  171 atct 174  Q
    ||||    
T  33977866 atct 33977869  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 2720620 - 2720533
Alignment:
Q  88 aaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttatctt 175  Q
    ||||||| |||| | |||||||| |||||||||| |||| | |||||| ||||||||| || ||| ||||||||| |||||||||||||    
T  2720620 aaattgtgcatttagaatcttaa-agcttaaaaagttatctcttcaatgcaatatttaatttttaattctatttttagatccttatctt 2720533  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 40293641 - 40293578
Alignment:
Q  114 cttaaaaatttatattttcaatacaatatttatt-gttatttctattttaagatccttatctta 176  Q
    ||||||||||||| |||||||  |||||||||||  ||| ||||||||||||||| ||||||||    
T  40293641 cttaaaaatttatcttttcaacgcaatatttattatttaattctattttaagatctttatctta 40293578  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 17354553 - 17354491
Alignment:
Q  114 cttaaaaatttatattttcaatacaatatttatt-gttatttctattttaagatccttatctt 175  Q
    |||||||| |||| ||||||||||||||||||||  ||  ||||||||||||||| |||||||    
T  17354553 cttaaaaacttatcttttcaatacaatatttattatttgattctattttaagatctttatctt 17354491  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 54612607 - 54612696
Alignment:
Q  83 cttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatatttattgttatttctattttaagatccttat 172  Q
    |||| |||||||  ||||||||  |||| || ||||||  ||||||||||||| ||| ||||||| ||| ||||| ||| ||||||||||    
T  54612607 cttagaaattgtgtattcataaatttaaaagtttaaaatcttatattttcaatgcaacatttatttttaattctagttttagatccttat 54612696  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 39835804 - 39835704
Alignment:
Q  74 aaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaatacaatattta-ttgttatttctattttaagatccttat 172  Q
    ||||||||  ||| |||||||  |||||||||||||| ||| |||||| |||| |||| |||  |||||||| || ||| ||||||||| | ||||||||    
T  39835804 aaatttaattttataaattgtgtattcataatcttaaaagcctaaaaacttatcttttaaatgtaatatttattttttaattctatttttaaatccttat 39835705  T
Q  173 c 173  Q
    |    
T  39835704 c 39835704  T

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Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 26472 - 26389
Alignment:
Q  53 aagataagaaactaaacaaataaatttaaccttaaaaattgttcattcataatcttaagagcttaaaaatttatattttcaata 136  Q
    ||||||||||| |||||  | |||||||||||  |||||||| ||||||||| ||||| || ||||||||||||||| ||||||    
T  26472 aagataagaaattaaacgtaaaaatttaacctcgaaaattgtgcattcataaccttaaaagattaaaaatttatattatcaata 26389  T

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