View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16089_low_8 (Length: 388)
Name: NF16089_low_8
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 17611115 - 17610748
Alignment:
| Q |
1 |
aaaagtttaaaacctttcggcatgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacct |
100 |
Q |
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| T |
17611115 |
aaaagtttaaaacctttcggcatgttgttacaggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacct |
17611016 |
T |
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| Q |
101 |
gcagcaagtcagaatacatgttggaaacaaggaagatatttcatttcaaaaaggaataaattcaaaaacccccagagaattcttaatgacgaataataag |
200 |
Q |
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| T |
17611015 |
gcagcaagtcagaatacatgttggaaacaaggaagatatttcatttaaaaaaggaataaattcaataacccccagagaattcttaatgacgaataataag |
17610916 |
T |
|
| Q |
201 |
gaattgtatgatcctgaactcataatgaggaattcttaaaactagatagaatttgttttcttcgaagtgttttaactttaagaaagaaacaataacttag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17610915 |
gaattgtatgatcctgaactcataatgaggaattcttaaaactagatagaatttgtttccttcgaagtgttttaactttaagaaagaaacaataacttag |
17610816 |
T |
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| Q |
301 |
aacaaagatannnnnnnactacacttaacaactgaatatatgaaagtatcgcatcacgtcaaaatggg |
368 |
Q |
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| T |
17610815 |
aacaaagatatttttttactacacttaacaactgaatatatgaaagtatcgcatcacgtcaaaatggg |
17610748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 48260487 - 48260398
Alignment:
| Q |
12 |
acctttcggcatgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
101 |
Q |
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| T |
48260487 |
acctttctgcatgtggttattgggtcatcagagtaaaatggagggtaaccgaccagcatttcgtacattatcgctcccagtgaccacctg |
48260398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 15869996 - 15870050
Alignment:
| Q |
47 |
aaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
101 |
Q |
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|||||| ||||| || |||||||||||||||||||| || ||||||||||||||| |
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| T |
15869996 |
aaatggtggataccctacaagcatttcatacattatggctccaagagaccacctg |
15870050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 15922564 - 15922620
Alignment:
| Q |
45 |
taaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
101 |
Q |
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| T |
15922564 |
taaaatggcggataccccacaagcatttcatacattatggctcctagagaccacctg |
15922620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 5815947 - 5815881
Alignment:
| Q |
33 |
ggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacc |
99 |
Q |
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||||||||||| ||||||||||||| || |||||||| ||||||| || || ||||||||||||| |
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| T |
5815947 |
ggatcatcagaacaaaatggaggatatccaacaagcatctcatacaagattgccccaagagaccacc |
5815881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 30392950 - 30393030
Alignment:
| Q |
21 |
catgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
101 |
Q |
| |
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|||||||| || ||||||||||| ||||| || ||||| || || | |||||||||||| ||||| || || ||||||||| |
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| T |
30392950 |
catgttgtcattggatcatcagaataaaaaggtggatatcccaccaacatttcatacatgatagcaccgagtgaccacctg |
30393030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 39056613 - 39056545
Alignment:
| Q |
33 |
ggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
101 |
Q |
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||||||||||| ||||| || ||||| || || | |||||||||||| ||||| ||||| ||||||||| |
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| T |
39056613 |
ggatcatcagaataaaaaggtggatatcccaccaacatttcatacataatagctccaagtgaccacctg |
39056545 |
T |
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