View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16089_low_9 (Length: 383)
Name: NF16089_low_9
Description: NF16089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16089_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 3939867 - 3939516
Alignment:
| Q |
14 |
agatgatttcattagcatttggtgcttcttatgtaaagccgaggaagatgtgctaattttcatggtctgcagcacttttgcattcttcaaaatgtactca |
113 |
Q |
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| T |
3939867 |
agataatttcattagcatatggtgcttcttatgtaaaaccgaggaagatgtgctaattttcatggtctgaagcacttttgcattcttcaaaatatactca |
3939768 |
T |
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| Q |
114 |
gcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttggtacagtctatggttcaccccaat |
213 |
Q |
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| T |
3939767 |
gcaaacagaagctcacagttgctgcctttataacctataagcgagcatgtccttaattgagaagaaagacattttggtacagtctgtggttcaccccaat |
3939668 |
T |
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| Q |
214 |
cgtgctaatccctttgacgttcataaagctgtcaaagaccacataagaagatcaggagattaaagtagagtttataaactaatcatcaatgtcataagta |
313 |
Q |
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| T |
3939667 |
cgtgctcatccctttgacgttcataaagctgtcaaagaccacataagaagatcaggagattaaagtagagtttataaactaatcatcaatgtcataagta |
3939568 |
T |
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| Q |
314 |
aaaccttatgaagtgtaagatcttgaagcttagggcaatgctggagtaattc |
365 |
Q |
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| T |
3939567 |
aaaccttttgaagtgtaagatcttgaagcttagggcaatgctggagtaattc |
3939516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 12652741 - 12652651
Alignment:
| Q |
73 |
tcatggtctgcagcacttttgcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgt |
163 |
Q |
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| T |
12652741 |
tcatggtgtggagtacttttgcattcttcaaaatgtactctgcaaactgaaactcggacttcatacctttataacctataagtgaacatgt |
12652651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 12486846 - 12486749
Alignment:
| Q |
93 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
190 |
Q |
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| T |
12486846 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12486749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 12508278 - 12508181
Alignment:
| Q |
93 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
190 |
Q |
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| T |
12508278 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12508181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 12541006 - 12540909
Alignment:
| Q |
93 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
190 |
Q |
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| T |
12541006 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12540909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 15329409 - 15329505
Alignment:
| Q |
67 |
taattttcatggtctgcagcacttttgcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgt |
163 |
Q |
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| T |
15329409 |
taattttcatggtgtgcaatacttttgcgttcttcaatatatactctacaaactgaagctcacatttcatgcctttataacctataatcgagcatgt |
15329505 |
T |
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