View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_high_11 (Length: 260)
Name: NF1608_high_11
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 13871325 - 13871094
Alignment:
| Q |
18 |
agattatgtgttatttgttaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgag |
117 |
Q |
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| T |
13871325 |
agattatgtgttatttgtcaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgag |
13871226 |
T |
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| Q |
118 |
tggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattaccctgatattacttgttcagcaagttaaatatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13871225 |
tggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattaccttgatattacttgttcagcaagttaaatatgt |
13871126 |
T |
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| Q |
218 |
atcttattagctcataactacatacacaggtt |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
13871125 |
atcttattagctcataactacatacacaggtt |
13871094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 14011450 - 14011219
Alignment:
| Q |
18 |
agattatgtgttatttgttaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgag |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14011450 |
agattatgtgttatttgtcaacaagtgttgactttattggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgag |
14011351 |
T |
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| Q |
118 |
tggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattaccctgatattacttgttcagcaagttaaatatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14011350 |
tggaatgacaaaagtgttgattgtccttctaagagaacatatgtaagtttctggtcgcatccattaccttgatattacttgttcagcaagttaaatatgt |
14011251 |
T |
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| Q |
218 |
atcttattagctcataactacatacacaggtt |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14011250 |
atcttattagctcataactacatacacaggtt |
14011219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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