View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_high_18 (Length: 239)
Name: NF1608_high_18
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 488186 - 488314
Alignment:
| Q |
101 |
taaccccgcgaaaacgcctcttccaattcttacttaattacaaaacctattattcctcattctcc-------tttctcatttcttacacaaacaacgccg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
488186 |
taaccccgcgaaaacgcctcttccaattcttacttaattacaaaacctattattcctcattctcctttctcatttctcatttcttacacaaacaacgccg |
488285 |
T |
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| Q |
194 |
attcattctcaaatcccaaatctcaccat |
222 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
488286 |
attcattctcaaatcccaaatctcaccat |
488314 |
T |
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