View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_high_19 (Length: 239)
Name: NF1608_high_19
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1608_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9585127 - 9585350
Alignment:
Q |
1 |
cgcgcaataaagtcctttcaaactaagctccaaattaatacctgtttcttattggacatagtgcaacacaagttatatgtatctctaactaaatcacaca |
100 |
Q |
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T |
9585127 |
cgcgcaataaagtcctttcaaactaagctccaaattaatacctgtttcttattggacatagtgcaacacaagttatatgtatctctaactaaatcacaca |
9585226 |
T |
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Q |
101 |
ctactaactgctacaacnnnnnnntgctactgttacagataatttgatctgtgaaatgtagtcccttgacccttattgcttcatcaacttgttatgcttg |
200 |
Q |
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T |
9585227 |
ctactaactgctacaacaaaaaactgctactgttacagataatttgacctgtgaaatgtagtcccttgacccttattgcttcatcaactttttatgcttg |
9585326 |
T |
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Q |
201 |
tatgttgttaaattggccaaaatt |
224 |
Q |
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|||||||||||||||||||||||| |
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T |
9585327 |
tatgttgttaaattggccaaaatt |
9585350 |
T |
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