View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_high_4 (Length: 381)
Name: NF1608_high_4
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 47539245 - 47538894
Alignment:
| Q |
13 |
aaaattcgtgcttttcttcaaatcatttttcccactaacaatagtaatgttagtaaaaccaacttggttacaacgaccaagttggaaaaggatgctaatt |
112 |
Q |
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| T |
47539245 |
aaaattcgtgcttttcttcaaatcatttttcccactaacaatagtaatgttagtaaaaccaacttggttacaacgaccaagttggaaaaggatgctaatt |
47539146 |
T |
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| Q |
113 |
atgggaaggaagaactcaaaaaagtgttttcgactttcgacaagaatggtgatggattcataacaaagcaagagttgaaggaatcattaaggaacataag |
212 |
Q |
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| T |
47539145 |
atgggaaggaagaactcaaaaaagtgttttcgactttcgacaagaatggtgatggattcataacaaagcaagagttgaaggaatcattaaggaacataag |
47539046 |
T |
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| Q |
213 |
aatcttcatggatgagaaagagattgatgatattgttggcaagtttgattctaatggagatgagttgattgattttgatgagttttgtttgttgactagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47539045 |
aatcttcatggatgagaaagagattgatgatattgttggcaagtttgattctaatggagatgagttgattgattttgatgagttttgtttgttgactagt |
47538946 |
T |
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| Q |
313 |
gagtttatgggaggaggtgaaggagagaaagaaggtggtgttggtagtaagg |
364 |
Q |
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| T |
47538945 |
gagtttatgggaggaggtgaaggagagaaagaaggtggtgttggtagtaagg |
47538894 |
T |
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