View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_high_7 (Length: 304)

Name: NF1608_high_7
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_high_7
NF1608_high_7
[»] chr2 (1 HSPs)
chr2 (1-304)||(15824348-15824651)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 15824651 - 15824348
Alignment:
Q  1 ttcaatactagtcactcctttcaccttggaatggatcatctttatcttccttacacaaattctcattcctgcataaaatatctaacacttcaatccattt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15824651 ttcaatacgagtcactcctttcaccttggaatggatcatctttatcttccttacacaaattctcattcctgcataaaatatctaacacttcaatccattt 15824552  T
Q  101 aactttcattctcatccatattctcaactctgaactctaaactctaaaacactttcatgcttcaatcatcaatggaaggtaccctcttccctaatagacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15824551 aactttcattctcatccatattctcaactctgaactctaaactctaaaacactttcatgcttcaatcatcaatggaaggtaccctcttccctaatagacc 15824452  T
Q  201 agttcttccactccccactaaaaaaccaacccaagcattgaaattcaaaccaacattttcacattctccaccaccaacaccatcacaacaatcacaatca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15824451 agttcttccactccccactaaaaaaccaacccaagcattgaaattcaaaccaacattttcacattctccaccaccaacaccatcacaacaatcacaatca 15824352  T
Q  301 caaa 304  Q
    ||||    
T  15824351 caaa 15824348  T

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