View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_high_9 (Length: 287)
Name: NF1608_high_9
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 4675597 - 4675362
Alignment:
| Q |
18 |
tcctggaaggctacccgtggagttttacaaggaggtggaagggaagatgggagacgatagagagatagtgtgatgtgaatttgaaagggtgagaaagcct |
117 |
Q |
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| T |
4675597 |
tcctggaaggctacccgtggagttttacaaggaggtggaagggaagatgggagacgatagagagatagtgtgatgtgaatttgaaagggtgagaaagcct |
4675498 |
T |
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| Q |
118 |
cttgggataatggtacaaaatcaaatttttcaggggttcaaaattcaaaaaccaaaggtggtttgtataattttttaaagttcaaggtgtgtctgtcaat |
217 |
Q |
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| T |
4675497 |
cttgggataatggtacaaaatcaaatttttcaggggttcaaaattcaaaaaccaaaggtggtttgtataattttttaaagttcaaggtgtgtctgtcaat |
4675398 |
T |
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| Q |
218 |
gggattgggaatcaatgcaaattactttctgtctca |
253 |
Q |
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| T |
4675397 |
gggattgagaatcaatgcaaattactttctgtctca |
4675362 |
T |
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