View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_11 (Length: 282)
Name: NF1608_low_11
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 1816476 - 1816213
Alignment:
| Q |
19 |
tgcttatccaaacagggtcatactcttactattcagtaactgactcacttacgctactactcttactatctaaatgtcttttaagcttgttttccactaa |
118 |
Q |
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| T |
1816476 |
tgcttatccaaacagggtcatactcttactattcagtaactgactcacttacgctactactcttactatctaaatgtcttttaagcttgttttccactaa |
1816377 |
T |
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| Q |
119 |
tcaattaataaacaaatttcaaacatacacttacttttcattaactcactcacttcacgctctcttaattaacgtaagtctaataaagatatatgattgg |
218 |
Q |
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| T |
1816376 |
tcaattaataaacaaatttcaaacatacacttacttttcattagctcactcacttcacgctctcttaattaacgtaagtctaataaagatatatgattgg |
1816277 |
T |
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| Q |
219 |
gaagaaaaattaatagcttttacactgtcaatcaatcataatcatcatatcatgacaaaaattt |
282 |
Q |
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| T |
1816276 |
gaagaaaaattaatagcttttacactgtcaatcaatcataatcatcatatcatgacaaacattt |
1816213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 1816795 - 1816740
Alignment:
| Q |
92 |
atgtcttttaagcttgttttccactaatcaattaataaacaaatttcaaacataca |
147 |
Q |
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| T |
1816795 |
atgtcttttaagcttgttttgtactaatcaatttataaacaaaattcaaatataca |
1816740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 6735428 - 6735393
Alignment:
| Q |
236 |
ttttacactgtcaatcaatcataatcatcatatcat |
271 |
Q |
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| T |
6735428 |
ttttacactgtcaaccaatcataatcatcatatcat |
6735393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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