View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_15 (Length: 250)
Name: NF1608_low_15
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44693892 - 44693658
Alignment:
| Q |
1 |
aaagaaattttacttttctggggaagaaatgttttaaaatacttaagtgattattgcacgtgcttgttagtgcaaatctctcgtttcgttttcaaggttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693892 |
aaagaaattttacttttctggggaagaaatgttttaaaata----agtgattattgcacgtgcttgttagtgcaaatctctcgtttcgttttcaaggttt |
44693797 |
T |
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| Q |
101 |
cgtaggaaagcacgtgatttcaaggaagtgccacgtgcagcaactgcatggctgaaattagtgacgtgtacgtgaaacacaaaaccagcgtgtgtttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693796 |
cgtaggaaagcacgtgatttcaaggaagtgccacgtgcagcaactgcatggctgaaattagtgacgtgtacgtgaaacacaaaaccagcgtgtgtttctc |
44693697 |
T |
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| Q |
201 |
gtttgtattcctatcattttgggaaattgtccctttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
44693696 |
gtttgtattcctatcattttgggaaattgtccctttcat |
44693658 |
T |
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