View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_16 (Length: 250)
Name: NF1608_low_16
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 34677410 - 34677659
Alignment:
| Q |
1 |
taagtcctttgccaggaaggacagtaacatgcctcaaacttggagatatatgcagctgcattttattgttccaatccaaaatagacatacacaatataag |
100 |
Q |
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| T |
34677410 |
taagtcctttgccaggaaggacagtaacatgcctcaaacttggagatatatgcagctgcattttattgttccaatccaaaatagacatacacaatataag |
34677509 |
T |
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| Q |
101 |
acaggacaatataatataaaaccaaatgaagaaacaggttcttaaattcttgaattcttcctcttctttatttcatttcacacaatttcatgcactgtat |
200 |
Q |
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| T |
34677510 |
acaggacaatataatataaaaccaaatgaaaaaacaggttcttaaattcttgaattcttcctcttctttatttcatttcacacaatttcatgcactgtat |
34677609 |
T |
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| Q |
201 |
gatcaacaaatagaggaattaaaactgcaagaactcatgtcaagttatgc |
250 |
Q |
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| T |
34677610 |
gatcaacaaatagaggaatcaaaactgcaagaactcatgtcaagttatgc |
34677659 |
T |
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