View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_low_17 (Length: 248)

Name: NF1608_low_17
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_low_17
NF1608_low_17
[»] chr8 (2 HSPs)
chr8 (13-248)||(31887810-31888054)
chr8 (218-248)||(44019547-44019577)
[»] chr7 (3 HSPs)
chr7 (217-248)||(2391004-2391035)
chr7 (218-248)||(38553816-38553846)
chr7 (218-248)||(39280851-39280881)
[»] chr5 (1 HSPs)
chr5 (218-248)||(1669613-1669643)
[»] chr3 (1 HSPs)
chr3 (219-248)||(41291723-41291752)
[»] chr1 (1 HSPs)
chr1 (219-248)||(30795700-30795729)
[»] chr4 (1 HSPs)
chr4 (212-240)||(25999389-25999417)
[»] chr2 (1 HSPs)
chr2 (220-248)||(37670514-37670542)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31887810 - 31888054
Alignment:
Q  13 ttctaagattgtggactgatatgcgcgaaccagtagaatttcnnnnnnnnnnnnnnnngacaagaaccagtagaattttttaaaacagacaaatgaagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||    
T  31887810 ttctaagattgtggactgatatgcgcgaaccagtagaatttcttttttctttttttttgacaagaaccagtagaattttttaaaacagacaaatgaagat 31887909  T
Q  113 ttannnnnnnnaaccagaaataacattgcattagattagattagat-----aagataagtccccttttaa----aaataacattgcattatattagatta 203  Q
    |||        |||||||||||||||||||||||||||||||||||     |||||||||||||||||||    ||||||||||||||||||||||||||    
T  31887910 ttattttttttaaccagaaataacattgcattagattagattagattagataagataagtccccttttaaccagaaataacattgcattatattagatta 31888009  T
Q  204 gatcagacaagtttccgtgaacttagctcagttggtaagaacaat 248  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  31888010 gatcagacaagttcccgtgaacttagctcagttggtaaggacaat 31888054  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 44019547 - 44019577
Alignment:
Q  218 ccgtgaacttagctcagttggtaagaacaat 248  Q
    |||||||||||||||||||||||||||||||    
T  44019547 ccgtgaacttagctcagttggtaagaacaat 44019577  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 248
Target Start/End: Original strand, 2391004 - 2391035
Alignment:
Q  217 tccgtgaacttagctcagttggtaagaacaat 248  Q
    ||||||||||||||||||||||||||||||||    
T  2391004 tccgtgaacttagctcagttggtaagaacaat 2391035  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 38553816 - 38553846
Alignment:
Q  218 ccgtgaacttagctcagttggtaagaacaat 248  Q
    |||||||||||||||||||||||||||||||    
T  38553816 ccgtgaacttagctcagttggtaagaacaat 38553846  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 39280881 - 39280851
Alignment:
Q  218 ccgtgaacttagctcagttggtaagaacaat 248  Q
    |||||||||||||||||||||||||||||||    
T  39280881 ccgtgaacttagctcagttggtaagaacaat 39280851  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 1669643 - 1669613
Alignment:
Q  218 ccgtgaacttagctcagttggtaagaacaat 248  Q
    |||||||||||||||||||||||||||||||    
T  1669643 ccgtgaacttagctcagttggtaagaacaat 1669613  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 41291723 - 41291752
Alignment:
Q  219 cgtgaacttagctcagttggtaagaacaat 248  Q
    ||||||||||||||||||||||||||||||    
T  41291723 cgtgaacttagctcagttggtaagaacaat 41291752  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 30795700 - 30795729
Alignment:
Q  219 cgtgaacttagctcagttggtaagaacaat 248  Q
    ||||||||||||||||||||||||||||||    
T  30795700 cgtgaacttagctcagttggtaagaacaat 30795729  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 25999389 - 25999417
Alignment:
Q  212 aagtttccgtgaacttagctcagttggta 240  Q
    |||||||||||||||||||||||||||||    
T  25999389 aagtttccgtgaacttagctcagttggta 25999417  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 37670542 - 37670514
Alignment:
Q  220 gtgaacttagctcagttggtaagaacaat 248  Q
    |||||||||||||||||||||||||||||    
T  37670542 gtgaacttagctcagttggtaagaacaat 37670514  T

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