View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_low_2 (Length: 494)

Name: NF1608_low_2
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_low_2
NF1608_low_2
[»] chr5 (2 HSPs)
chr5 (20-480)||(12616164-12616629)
chr5 (125-246)||(34946014-34946135)
[»] chr4 (3 HSPs)
chr4 (159-253)||(51108601-51108694)
chr4 (132-205)||(31858402-31858474)
chr4 (153-217)||(35345268-35345332)
[»] chr3 (2 HSPs)
chr3 (130-243)||(32809939-32810052)
chr3 (158-217)||(2453645-2453705)
[»] chr8 (1 HSPs)
chr8 (153-208)||(29775735-29775790)
[»] chr7 (2 HSPs)
chr7 (153-253)||(31255759-31255860)
chr7 (187-244)||(28288932-28288990)
[»] chr2 (1 HSPs)
chr2 (212-253)||(28317722-28317763)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 12616629 - 12616164
Alignment:
Q  20 catacaatcgaatcaatatttctaaataaaattgcaatgaggaatttaaaattgggatctagctaaggattatagttattttatagatcgcagacaaaac 119  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    | |||||||||||||||||    
T  12616629 catacaatcgaatcaatatttttaaataaaattgcaatgaagaatttaaaattgagatctagttaaggattatagtt----tgtagatcgcagacaaaac 12616534  T
Q  120 ctcatttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||| |||||||     
T  12616533 ctcatttttcttttctctttgaaggatttgaaataagaattagtgcagttaaacctaaaaacttaattgtttagtgtccaatatattgaataaaaaaagt 12616434  T
Q  220 atattatacaacatcatataaagttcacacaaaatacgtatat-----------tacgtactaatataaaataaaataaaatgtttggaacaattgaacg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||| |||||||||||||||||||||||    
T  12616433 atattatacaacatcatataaagttcacacaaaatacgtatatagtagtagtaatacgtactaatataaaa-aaaaaaaaatgtttggaacaattgaacg 12616335  T
Q  309 tggcttttgttgattcctcttctaactccgtcccaggatttgaactaagttgggtttctaatatttttactaaatgtacctcactcataatatacatctt 408  Q
    ||| |||||||||||||  ||||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  12616334 tggattttgttgattccctttctaactccgtccctggatttgaacttagttgggttgctaata-ttttactaaatgcacctcactcataatatacatctt 12616236  T
Q  409 ataaagcttcatctacatcgcaactttgtgaaccaacgtggcatacgaagtcaaatacttcaaggtagtaag 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12616235 ataaagcttcatctacatcgcaactttgtgaaccaacgtggcatatgaagtcaaatacttcaaggtagtaag 12616164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 34946014 - 34946135
Alignment:
Q  125 ttttcttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatatt 224  Q
    |||| |||||||||| | |||| |||  |||| |||| |||||||||||||| ||| ||||  |||||| ||| |||||||||| | |||||||   |||    
T  34946014 tttttttttctcttttagggatatgagttaaggattagtgcaattaaacctaaaaatttaagagtttaaggtctaatatattgagtaaaaaaagttcatt 34946113  T
Q  225 atacaacatcatataaagttca 246  Q
    ||| ||||||||||||||||||    
T  34946114 atataacatcatataaagttca 34946135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 51108694 - 51108601
Alignment:
Q  159 ttaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatattatacaacatcatataaagttcacacaaaa 253  Q
    ||||||||||||||| |||||| |||| ||||||| ||  |||||||||| | || || |  |||||||||||||||||||||||||||| ||||    
T  51108694 ttaatgcaattaaacttagaaaattaagtgtttaaagttaaatatattgagt-aataatgtttattatacaacatcatataaagttcacaaaaaa 51108601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 31858402 - 31858474
Alignment:
Q  132 ttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatat 205  Q
    |||||||| ||||||||||  |||  |||| ||||||||||| ||||||||| ||| ||||| |||||||||||    
T  31858402 ttctcttttaaggatttgagttaaatattagtgcaattaaacttagaaactt-aatctttaaggtccaatatat 31858474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 35345332 - 35345268
Alignment:
Q  153 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaa 217  Q
    ||||||||| || ||||||||||| |||||||||||||| |  ||||  ||||||||| ||||||    
T  35345332 taagaattagtgtaattaaacctaaaaacttaaatgtttgagttccacaatattgaatcaaaaaa 35345268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 32809939 - 32810052
Alignment:
Q  130 ttttctctttgaaggatttgaaataagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaaaaaaggatattataca 229  Q
    |||||||||| ||||||||||  |||| | || |||||||||||||| |||||||| || |||   ||||||||||||| | ||||||||  ||| || |    
T  32809939 ttttctcttttaaggatttgagttaaggaatagtgcaattaaacctaaaaacttaagtgattatgatccaatatattgagtgaaaaaaggcaattgtata 32810038  T
Q  230 acatcatataaagt 243  Q
     |||||||||||||    
T  32810039 gcatcatataaagt 32810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 2453645 - 2453705
Alignment:
Q  158 attaatgcaattaaacctagaaacttaaatgtttaatg-tccaatatattgaattaaaaaa 217  Q
    |||| |||||||||||||||||| |||| ||||||||| |||| |||||||  ||||||||    
T  2453645 attattgcaattaaacctagaaatttaagtgtttaatgttccactatattgttttaaaaaa 2453705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 29775735 - 29775790
Alignment:
Q  153 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattga 208  Q
    ||||||||||| |||||||||||| ||||| ||||||||||   ||||||||||||    
T  29775735 taagaattaattcaattaaacctaaaaactaaaatgtttaagacccaatatattga 29775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 31255759 - 31255860
Alignment:
Q  153 taagaattaatgcaattaaacctagaaacttaaatgtttaatgtccaatatattgaattaa--aaaaggatattatacaacatcatataaagttcacaca 250  Q
    |||| |||| || |||||||||||||||||| ||||||||| |||||||||||| ||| ||  ||||||  | ||||||||| | |||| |||||||| |    
T  31255759 taaggattagtgtaattaaacctagaaactt-aatgtttaaggtccaatatattaaatcaaagaaaaggtcaatatacaacaacgtatagagttcacata 31255857  T
Q  251 aaa 253  Q
    |||    
T  31255858 aaa 31255860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 28288932 - 28288990
Alignment:
Q  187 tgtttaatgtccaatatattgaattaaaaaagga-tattatacaacatcatataaagtt 244  Q
    |||||||  ||||||||||||| |||||||||||  ||||||||| |||||||||||||    
T  28288932 tgtttaagatccaatatattgagttaaaaaaggaccattatacaatatcatataaagtt 28288990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 28317722 - 28317763
Alignment:
Q  212 aaaaaaggatattatacaacatcatataaagttcacacaaaa 253  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  28317722 aaaaaagcttattatacaacatcatataaagttcacaaaaaa 28317763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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