View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_low_22 (Length: 237)

Name: NF1608_low_22
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_low_22
NF1608_low_22
[»] chr8 (13 HSPs)
chr8 (133-183)||(16383376-16383426)
chr8 (133-183)||(34307215-34307265)
chr8 (133-183)||(24307844-24307894)
chr8 (133-183)||(24307628-24307678)
chr8 (134-180)||(30479528-30479574)
chr8 (134-183)||(1179991-1180040)
chr8 (133-170)||(32032724-32032761)
chr8 (134-183)||(34012347-34012396)
chr8 (134-182)||(15048233-15048281)
chr8 (136-183)||(10621138-10621185)
chr8 (133-183)||(16056452-16056502)
chr8 (134-183)||(504172-504221)
chr8 (134-183)||(12831047-12831096)
[»] chr7 (19 HSPs)
chr7 (133-183)||(22343360-22343410)
chr7 (133-182)||(41915740-41915789)
chr7 (133-180)||(38044196-38044243)
chr7 (133-180)||(7727905-7727952)
chr7 (134-180)||(40846167-40846213)
chr7 (134-183)||(32564477-32564526)
chr7 (134-183)||(8238212-8238262)
chr7 (133-183)||(10343614-10343664)
chr7 (133-183)||(18207179-18207229)
chr7 (133-182)||(8080435-8080484)
chr7 (133-184)||(11044187-11044238)
chr7 (133-168)||(12310905-12310940)
chr7 (133-183)||(7389388-7389438)
chr7 (133-183)||(36208172-36208222)
chr7 (133-183)||(36361964-36362014)
chr7 (133-183)||(36362025-36362075)
chr7 (134-183)||(35137533-35137582)
chr7 (134-183)||(39255974-39256023)
chr7 (133-173)||(38837216-38837256)
[»] chr6 (9 HSPs)
chr6 (133-183)||(15990093-15990143)
chr6 (133-183)||(30341411-30341461)
chr6 (134-183)||(15508075-15508124)
chr6 (139-183)||(22880709-22880753)
chr6 (139-183)||(28536537-28536581)
chr6 (133-181)||(31110812-31110860)
chr6 (141-183)||(32869685-32869727)
chr6 (134-183)||(4231548-4231597)
chr6 (134-183)||(31953081-31953130)
[»] chr5 (12 HSPs)
chr5 (133-183)||(3921316-3921366)
chr5 (133-183)||(2252219-2252269)
chr5 (133-183)||(39688948-39688998)
chr5 (134-183)||(28177775-28177824)
chr5 (134-183)||(33149689-33149738)
chr5 (139-183)||(18520935-18520979)
chr5 (139-183)||(36875654-36875698)
chr5 (133-183)||(36732993-36733043)
chr5 (134-183)||(35785199-35785248)
chr5 (134-183)||(35943943-35943992)
chr5 (134-182)||(26720516-26720564)
chr5 (134-182)||(26990265-26990313)
[»] chr1 (10 HSPs)
chr1 (134-183)||(50591051-50591100)
chr1 (134-181)||(41608546-41608593)
chr1 (133-183)||(5959051-5959101)
chr1 (134-183)||(3000319-3000368)
chr1 (133-183)||(2581914-2581964)
chr1 (133-183)||(38595153-38595203)
chr1 (134-183)||(9474927-9474976)
chr1 (134-183)||(47452371-47452420)
chr1 (134-183)||(47748443-47748491)
chr1 (133-183)||(32813246-32813296)
[»] chr4 (14 HSPs)
chr4 (133-181)||(19670769-19670817)
chr4 (133-183)||(32766957-32767007)
chr4 (133-183)||(50813943-50813993)
chr4 (134-183)||(55079765-55079814)
chr4 (133-180)||(47986207-47986254)
chr4 (133-183)||(29548010-29548060)
chr4 (133-183)||(55475190-55475240)
chr4 (134-183)||(6034044-6034093)
chr4 (134-183)||(11511513-11511562)
chr4 (134-183)||(40574779-40574828)
chr4 (134-182)||(8343215-8343263)
chr4 (134-178)||(18924551-18924595)
chr4 (133-183)||(480498-480548)
chr4 (133-173)||(44536806-44536846)
[»] chr2 (14 HSPs)
chr2 (134-183)||(43490121-43490170)
chr2 (133-183)||(45097786-45097836)
chr2 (133-183)||(9058479-9058529)
chr2 (133-183)||(26891555-26891605)
chr2 (133-183)||(33436151-33436201)
chr2 (134-183)||(38732354-38732403)
chr2 (134-183)||(40613953-40614002)
chr2 (139-183)||(28863460-28863504)
chr2 (133-179)||(30915462-30915508)
chr2 (133-183)||(13365350-13365402)
chr2 (134-183)||(17820055-17820104)
chr2 (139-180)||(19930874-19930915)
chr2 (134-183)||(40701478-40701527)
chr2 (133-181)||(15428793-15428841)
[»] chr3 (13 HSPs)
chr3 (134-183)||(45058604-45058652)
chr3 (133-180)||(36331432-36331479)
chr3 (133-183)||(11095404-11095454)
chr3 (133-183)||(33118902-33118952)
chr3 (137-183)||(42823114-42823160)
chr3 (133-183)||(49607413-49607463)
chr3 (134-183)||(8076393-8076442)
chr3 (134-183)||(14623890-14623939)
chr3 (138-183)||(52629304-52629349)
chr3 (134-183)||(53982011-53982060)
chr3 (139-183)||(13898106-13898150)
chr3 (133-183)||(54868946-54868996)
chr3 (134-183)||(26141583-26141632)
[»] scaffold0018 (1 HSPs)
scaffold0018 (147-183)||(152511-152547)


Alignment Details
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16383376 - 16383426
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16383376 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 16383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 34307215 - 34307265
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34307215 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 34307265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 24307894 - 24307844
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24307894 agagttatgatacataaacacccttaggtggcaatacatcccttgacaccc 24307844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 24307628 - 24307678
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  24307628 agagttatgatacataaacacccttaggtggcaatacatccattgacaccc 24307678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 30479574 - 30479528
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacaccctttgaca 30479528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 1180040 - 1179991
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  1180040 gagtaatgatacatagacacccttaggtggtaatacaccctttgacaccc 1179991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 32032724 - 32032761
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaataca 170  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  32032724 agagttatgatacataaacacccttaggtggcaataca 32032761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 34012396 - 34012347
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccctttgacaccc 34012347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 15048281 - 15048233
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||||||||||||| ||| |||||||||| ||||||||| ||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacaccctttgacacc 15048233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 10621185 - 10621138
Alignment:
Q  136 gttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  10621185 gttatgatacatagacatccttaggtggtaatacaccctttgacaccc 10621138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 16056502 - 16056452
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||| ||||| |||  |||||| ||||||||||||    
T  16056502 agagttatgatacataaacatccttatgtgacaatacatcccttgacaccc 16056452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 504221 - 504172
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||    
T  504221 gagtaatgatacatagacacccttaggtggcaatacaccttttgacaccc 504172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 12831047 - 12831096
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||  ||||||||| |||||||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacaccc 12831096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 22343360 - 22343410
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 22343410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 41915740 - 41915789
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatacaccccttgacacc 41915789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 38044196 - 38044243
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38044196 agagttatgatacataaacacccttaggtggcaatacaccccttgaca 38044243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 7727905 - 7727952
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  7727905 agagttatgatacataaacacccttaggtggtaatacacctcttgaca 7727952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 40846213 - 40846167
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgaca 40846167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 32564526 - 32564477
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccccttgacaccc 32564477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 8238212 - 8238262
Alignment:
Q  134 gagttatgatacataaacaccct-taggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  8238212 gagttatgatacataaacaccctgtaggtggcaatacaccctttgacaccc 8238262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 10343664 - 10343614
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||||||||    
T  10343664 agagtaatgatacatagacacccttaggtggaaatacacatcttgacaccc 10343614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 18207179 - 18207229
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  18207179 agagttatgatacatagacaaccttaggtggcaatacacctcttgacaccc 18207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 8080484 - 8080435
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||| |||||||||| |||||||||||||| ||||||||| ||||||||    
T  8080484 agagtaatgatacatagacacccttaggtggcaatacaccctttgacacc 8080435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 11044187 - 11044238
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacacccc 184  Q
    ||||| |||||||||| |||||||||||||| |||||| || ||||||||||    
T  11044187 agagtaatgatacatagacacccttaggtggcaatacatcctttgacacccc 11044238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 12310905 - 12310940
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaata 168  Q
    |||||||||||||||| |||||||||||||||||||    
T  12310905 agagttatgatacatagacacccttaggtggaaata 12310940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 7389388 - 7389438
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||| | |||||||||    
T  7389388 agagtaatgatacatagacacccttaggtggcaatacactctttgacaccc 7389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 36208172 - 36208222
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||| |||||||||||||| ||||||  | |||||||||    
T  36208172 agagttatgatacatagacacccttaggtggtaatacattcattgacaccc 36208222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 36362014 - 36361964
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| |||||| || |||||||||    
T  36362014 agagtaatgatacatagacacccttaggtggcaatacatcctttgacaccc 36361964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 36362025 - 36362075
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| |||||| || |||||||||    
T  36362025 agagtaatgatacatagacacccttaggtggtaatacatcctttgacaccc 36362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 35137533 - 35137582
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||| ||| |||||||||||||| ||||||||| |||||||||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccctttgacaccc 35137582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 39256023 - 39255974
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||| ||||    
T  39256023 gagttatgatacatagacaaccttaggtggcaatacaccacttgataccc 39255974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 38837216 - 38837256
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccc 173  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  38837216 agagtaatgatacatagacacccttaggtggcaatacaccc 38837256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 15990143 - 15990093
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15990143 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 15990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 30341461 - 30341411
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30341461 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 30341411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 15508124 - 15508075
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 15508075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 22880753 - 22880709
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgacaccc 22880709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 28536581 - 28536537
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||    
T  28536581 atgatacataaacatccttaggtggcaatacaacccttgacaccc 28536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 31110860 - 31110812
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacac 181  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  31110860 agagttatgatacatagacatccttaggtggcaatacaccctttgacac 31110812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 32869685 - 32869727
Alignment:
Q  141 gatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||| |||||||||||||| ||||||||| |||||||||    
T  32869685 gatacatagacacccttaggtggcaatacaccctttgacaccc 32869727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 4231548 - 4231597
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||| |||||||| | |||||||| ||||||||||||| |||||    
T  4231548 gagttatgattcataaacatcattaggtggcaatacaccccttgccaccc 4231597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 31953130 - 31953081
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||| ||| ||| |||||||||| |||||||||||||||||||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccccttgacaccc 31953081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 3921366 - 3921316
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3921366 agagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 3921316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 2252269 - 2252219
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  2252269 agagttatgatacataaacatccttaggtggcaatacaccccttgacaccc 2252219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 39688998 - 39688948
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  39688998 agagttatgatacataaacacccttaagtggcaatacatcccttgacaccc 39688948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 28177775 - 28177824
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccctttgacaccc 28177824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 33149738 - 33149689
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccctttgacaccc 33149689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 18520979 - 18520935
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacaccc 18520935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 36875698 - 36875654
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  36875698 atgatacatagacacccttaggtggcaatacaccctttgacaccc 36875654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 36733043 - 36732993
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||| | ||||||||| |||||||||    
T  36733043 agagtaatgatacatagacacccttaggtagcaatacaccctttgacaccc 36732993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 35785199 - 35785248
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||    
T  35785199 gagtaatgatacatagacacccttaggtggcaatacaccttttgacaccc 35785248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 35943992 - 35943943
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| |||||||||||||| |||||| |  |||||||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacaccc 35943943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 26720516 - 26720564
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||||||||||||| ||| |||||||||| ||||||||| || |||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacaccctttaacacc 26720564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 26990265 - 26990313
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||||||||||||| ||| |||||||||| ||||||||| || |||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacaccctttaacacc 26990313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 50591100 - 50591051
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccccttgacaccc 50591051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 41608593 - 41608546
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacac 181  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccccttgacac 41608546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 5959101 - 5959051
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  5959101 agagttatgatacataaacacccttaagtggcaatacacctcttgacaccc 5959051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 3000319 - 3000368
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacaccc 3000368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 2581914 - 2581964
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  2581914 agagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 2581964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 38595153 - 38595203
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||||||||| |||||||| ||||||||| |||||||||    
T  38595153 agagtaatgatacataaacacctttaggtggcaatacaccctttgacaccc 38595203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 9474976 - 9474927
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 9474927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 47452420 - 47452371
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccctttgacaccc 47452371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 47748443 - 47748491
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  47748443 gagttatgatacataaatacccttaggtggcaataca-cccttgacaccc 47748491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 32813246 - 32813296
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||| ||| |||||||||| ||||||||| || ||||||    
T  32813246 agagttatgatacatagacatccttaggtggcaatacaccctttaacaccc 32813296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 19670817 - 19670769
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacac 181  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19670817 agagttatgatacataaacacccttaggtggcaatacaccccttgacac 19670769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 32766957 - 32767007
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  32766957 agagttatgatacataaacactcttaggtggcaatacaccccttgacaccc 32767007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 50813993 - 50813943
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  50813993 agagttatgatacataaacactcttaggtggtaatacaccccttgacaccc 50813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 55079814 - 55079765
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacctcttgacaccc 55079765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 47986207 - 47986254
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaatacatcccttgaca 47986254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 29548060 - 29548010
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  29548060 agagttatgatacataaacatccttaggtggcaatacatcccttgacaccc 29548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 55475190 - 55475240
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  55475190 agagttatgatacataaacatccttaggtggcaatacaccctttgacaccc 55475240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 6034044 - 6034093
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 6034093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 11511562 - 11511513
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 11511513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 40574779 - 40574828
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  40574779 gagttatgatacatagacatccttaggtggtaatacaccctttgacaccc 40574828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 8343263 - 8343215
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacacc 182  Q
    ||||||||||||||||||| |||||||||| |||||| || ||||||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatcctttgacacc 8343215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 18924595 - 18924551
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttga 178  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||    
T  18924595 gagttatgatccataaatacccttaggtggcaatacaccccttga 18924551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 480548 - 480498
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||  ||||||||| |||||||||    
T  480548 agagtaatgatacatagacacccttaggtgacaatacaccctttgacaccc 480498  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 44536846 - 44536806
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccc 173  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  44536846 agagttatgatacataaacacttttaggtggcaatacaccc 44536806  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 43490121 - 43490170
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccccttgacaccc 43490170  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 45097836 - 45097786
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  45097836 agagttatgatacataaacatccttaggtggcaatacatcccttgacaccc 45097786  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 9058479 - 9058529
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  9058479 agagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 9058529  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 26891605 - 26891555
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||  ||||||||||||| ||||||||||| |||||||    
T  26891605 agagttatgatacatagccacccttaggtggcaatacacccctagacaccc 26891555  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 33436201 - 33436151
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  33436201 agagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 33436151  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 38732354 - 38732403
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  38732354 gagttatgatacataaacacccttatgtgacaatacatcccttgacaccc 38732403  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 40614002 - 40613953
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccctttgacaccc 40613953  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 28863460 - 28863504
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgacaccc 28863504  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 30915462 - 30915508
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgac 179  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||    
T  30915462 agagtaatgatacatagacacccttaggtggcaatacaccctttgac 30915508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 13365350 - 13365402
Alignment:
Q  133 agagttatgatacataaacac--ccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||  |||||| ||| |||| ||||||||||||||    
T  13365350 agagttatgatacataaacacacccttagatggcaatataccccttgacaccc 13365402  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 17820104 - 17820055
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |  ||||||| |||||||||||||||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccccttgacaccc 17820055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 19930915 - 19930874
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    |||||||||| |||||||||||||| ||||||||| ||||||    
T  19930915 atgatacatagacacccttaggtggcaatacaccctttgaca 19930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 40701478 - 40701527
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||    
T  40701478 gagtaatgatacatagacacccttaggtggcaatacaccttttgacaccc 40701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 15428841 - 15428793
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacac 181  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||| ||||    
T  15428841 agagttatgatacataaacatccttatgtggccatacaccccttaacac 15428793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 45058652 - 45058604
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  45058652 gagttatgatacataaacacccttaggtggcaataca-cccttgacaccc 45058604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 36331479 - 36331432
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgaca 180  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  36331479 agagttatgatacataaacacccttagatggcaatgcaccccttgaca 36331432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 11095454 - 11095404
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  11095454 agagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 11095404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 33118952 - 33118902
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||| |||||||||||||  ||||||||| |||||||||    
T  33118952 agagttatgatacatagacacccttaggtgacaatacaccctttgacaccc 33118902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 42823114 - 42823160
Alignment:
Q  137 ttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||    
T  42823114 ttatgatacataaacaccattatgtggtaatacaccccttgacaccc 42823160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 49607413 - 49607463
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  49607413 agagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 49607463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 8076393 - 8076442
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| ||||||||||||||||||||||||| | ||||||| |||||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacaccc 8076442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 14623939 - 14623890
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| ||| |||||||||| |||||||||||||||||||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccccttgacaccc 14623890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 52629304 - 52629349
Alignment:
Q  138 tatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgacaccc 52629349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 53982011 - 53982060
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||| |||||||||| |||||||||||||| ||||||||| |||||||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacaccc 53982060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 13898150 - 13898106
Alignment:
Q  139 atgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||    
T  13898150 atgatagataaacatccttaggtggcaatacaccccttgacaccc 13898106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 54868996 - 54868946
Alignment:
Q  133 agagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||| |||||||||| |||||||||||||| ||||||||  |||||||||    
T  54868996 agagtaatgatacatagacacccttaggtggcaatacaccttttgacaccc 54868946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 26141632 - 26141583
Alignment:
Q  134 gagttatgatacataaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||||||| ||| |||||||||| ||||||||| || ||||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccctttaacaccc 26141583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 152511 - 152547
Alignment:
Q  147 taaacacccttaggtggaaatacaccccttgacaccc 183  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  152511 taaacacccttgggtggcaatacaccccttgacaccc 152547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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