View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_23 (Length: 236)
Name: NF1608_low_23
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 5305532 - 5305737
Alignment:
| Q |
15 |
aggaataataagcttaccccactaatccattaaagaaaagccataaccaaactctccaattcaacttctgccctactcctctgcaaccataagtatcgaa |
114 |
Q |
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| T |
5305532 |
aggaataataagcttaccccactaatccattaaagaaaagccataaccaaactctccaattcaacttctgccctactcctctgcaaccataagtatcgaa |
5305631 |
T |
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| Q |
115 |
caaataatatcaaatcacaagtataaccaaatcgattcaatagttattgttcaagcatagtataagattacaactaatggattcatccgttataaaatat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5305632 |
caaataatatcaaatcacaagtataaccaaatcgattcaatagttattgttcaagcatagtataagattacaactaatggattcatccgttataaaatat |
5305731 |
T |
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| Q |
215 |
aaacaa |
220 |
Q |
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|||||| |
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| T |
5305732 |
aaacaa |
5305737 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 29225467 - 29225547
Alignment:
| Q |
29 |
taccccactaatccattaaagaaaagccataaccaaactctccaattcaacttctgccctactcctctgcaaccataagta |
109 |
Q |
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|||||||| ||||| |||| ||||||||| ||||||||||||||||| ||||||| | | ||||||||||||||||||| |
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| T |
29225467 |
taccccacgaatccgttaaggaaaagccagaaccaaactctccaattgaacttcttcgcctgtcctctgcaaccataagta |
29225547 |
T |
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