View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_24 (Length: 235)
Name: NF1608_low_24
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30463816 - 30463599
Alignment:
| Q |
1 |
atctttggtagtgttcctcaatggtgacagtactgcaagcatcaataataattctagatccacactcaagcactcaactttctaataataacaaaatggg |
100 |
Q |
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| T |
30463816 |
atctttggtagtgttcctcaatggtgacagtactgcaagcatcaataataattctagatccacactcaagtactcaactttctaataataacaaaatggg |
30463717 |
T |
|
| Q |
101 |
aaactcaatatgtaaagctaggtgagttattatttttggttgcacgttaagcaatgcttattatgtacatgaaaattgag-nnnnnnnntgagaaaagct |
199 |
Q |
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| T |
30463716 |
aaactcaatatgtaaagctaggtgaattattatctttggttgcacattaagcaatgc---ttatgtacatgaaaattgagaaaaaaaaatgagaaaagct |
30463620 |
T |
|
| Q |
200 |
tagaaatggtatagggtttat |
220 |
Q |
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||||||||||||||||||||| |
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| T |
30463619 |
tagaaatggtatagggtttat |
30463599 |
T |
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