View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_low_25 (Length: 233)

Name: NF1608_low_25
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_low_25
NF1608_low_25
[»] chr3 (12 HSPs)
chr3 (1-217)||(4140613-4140829)
chr3 (1-37)||(20714239-20714275)
chr3 (1-36)||(27528407-27528442)
chr3 (1-36)||(36818953-36818988)
chr3 (1-35)||(3069613-3069647)
chr3 (1-38)||(1901965-1902002)
chr3 (1-38)||(1911411-1911448)
chr3 (1-38)||(5398913-5398950)
chr3 (1-34)||(32931957-32931990)
chr3 (1-38)||(49761314-49761351)
chr3 (1-38)||(52454133-52454170)
chr3 (1-37)||(12792634-12792670)
[»] chr8 (11 HSPs)
chr8 (1-38)||(20288528-20288565)
chr8 (1-38)||(21075157-21075194)
chr8 (1-37)||(5771915-5771951)
chr8 (1-39)||(28927675-28927713)
chr8 (1-38)||(1068601-1068638)
chr8 (1-34)||(30927970-30928003)
chr8 (1-38)||(45101391-45101428)
chr8 (1-33)||(1065417-1065449)
chr8 (1-37)||(5772011-5772047)
chr8 (1-37)||(41541865-41541901)
chr8 (1-37)||(44380653-44380689)
[»] chr1 (8 HSPs)
chr1 (1-38)||(9987946-9987983)
chr1 (1-38)||(27742612-27742649)
chr1 (11-39)||(4213066-4213094)
chr1 (1-33)||(13813558-13813590)
chr1 (2-34)||(36439656-36439688)
chr1 (1-37)||(42256456-42256492)
chr1 (1-37)||(48325806-48325842)
chr1 (1-37)||(48858819-48858855)
[»] chr7 (6 HSPs)
chr7 (1-36)||(30864456-30864491)
chr7 (1-36)||(31274568-31274603)
chr7 (1-38)||(25200398-25200435)
chr7 (1-38)||(37352018-37352055)
chr7 (1-34)||(44649365-44649398)
chr7 (1-37)||(2469699-2469735)
[»] chr4 (17 HSPs)
chr4 (1-36)||(5208366-5208401)
chr4 (1-35)||(51717321-51717355)
chr4 (1-34)||(1796365-1796398)
chr4 (1-34)||(27001448-27001481)
chr4 (1-38)||(43769718-43769755)
chr4 (1-38)||(44368241-44368278)
chr4 (1-34)||(50721784-50721817)
chr4 (1-34)||(51377332-51377365)
chr4 (1-38)||(51573671-51573708)
chr4 (1-38)||(54000693-54000730)
chr4 (1-34)||(55268040-55268073)
chr4 (1-33)||(7037523-7037555)
chr4 (1-37)||(7632501-7632537)
chr4 (1-33)||(32012896-32012928)
chr4 (1-37)||(33278671-33278707)
chr4 (11-39)||(38134347-38134375)
chr4 (1-33)||(39241329-39241361)
[»] chr2 (12 HSPs)
chr2 (1-36)||(34144590-34144625)
chr2 (1-35)||(7485457-7485491)
chr2 (1-38)||(4738611-4738648)
chr2 (1-38)||(6646830-6646867)
chr2 (1-38)||(27307270-27307307)
chr2 (1-38)||(36132969-36133006)
chr2 (1-38)||(37731239-37731276)
chr2 (1-34)||(37966366-37966399)
chr2 (1-33)||(25801841-25801873)
chr2 (1-37)||(29711975-29712011)
chr2 (1-33)||(30487508-30487540)
chr2 (1-37)||(31296884-31296920)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-36)||(88805-88838)
[»] chr6 (4 HSPs)
chr6 (1-34)||(9954547-9954580)
chr6 (1-38)||(17551418-17551455)
chr6 (1-33)||(2056783-2056815)
chr6 (6-34)||(6164234-6164262)
[»] chr5 (10 HSPs)
chr5 (1-38)||(5007759-5007796)
chr5 (1-34)||(9594477-9594510)
chr5 (1-38)||(30574416-30574453)
chr5 (1-38)||(34270334-34270371)
chr5 (1-33)||(3263547-3263579)
chr5 (1-33)||(9599767-9599799)
chr5 (1-33)||(12718419-12718451)
chr5 (1-33)||(12779645-12779677)
chr5 (1-37)||(33823732-33823768)
chr5 (1-37)||(35301630-35301666)
[»] scaffold0592 (1 HSPs)
scaffold0592 (6-38)||(905-937)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4140613 - 4140829
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttttcgtatgaaacaacaataattaaggtatggtagttggtacctccgtgactttaatagtgaagt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4140613 tgtcacaaattggttgttcaaatatcatttctcttttttgtacaaaacaacaataattaaggtatggtagttggtacctccgtgactttaatagtgaagt 4140712  T
Q  101 tatctattatttgtttaaacatgtatatccgttgcattccccatttttaaacatgtgtttctattcttgcaaactgaccaacttattgttgtagaagcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4140713 tatctattatttgtttaaacatgtatatccgttgcattccccatttttaaacatgtatttctattcttgcaaactgaccaacttattgttgtagaagcac 4140812  T
Q  201 tccttgcagcttctttt 217  Q
    |||||||||||||||||    
T  4140813 tccttgcagcttctttt 4140829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20714275 - 20714239
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  20714275 tgtcacaaattggttgtacaaatatcatttctctttt 20714239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27528442 - 27528407
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27528442 tgtcacaaagtggttgttcaaatatcatttctcttt 27528407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36818988 - 36818953
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36818988 tgtcacaaattggttgtacaaatatcatttctcttt 36818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3069613 - 3069647
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctt 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  3069613 tgtcacaaattggttgtacaaatatcatttctctt 3069647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1901965 - 1902002
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  1901965 tgtcacaaagtggttgtacaaatatcatttctcttttt 1902002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1911411 - 1911448
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  1911411 tgtcacaaagtggttgtacaaatatcatttctcttttt 1911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5398950 - 5398913
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  5398950 tgtcacaaagtggttgtacaaatatcatttctcttttt 5398913  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32931957 - 32931990
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  32931957 tgtcacaaattggttgtacaaatatcatttctct 32931990  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49761351 - 49761314
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  49761351 tgtcacaaaatggatgttcaaatatcatttctcttttt 49761314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52454133 - 52454170
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  52454133 tgtcacaaattgattgtacaaatatcatttctcttttt 52454170  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12792670 - 12792634
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  12792670 tgtcacaaagtggttgtacaaatatcatttctctttt 12792634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20288565 - 20288528
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20288565 tgtcacaaattggttgtacaaatatcatttctcttttt 20288528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21075194 - 21075157
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21075194 tgtcacaaattggttgtacaaatatcatttctcttttt 21075157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5771915 - 5771951
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  5771915 tgtcacaaaatggttgttcaaatatcatttctctttt 5771951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28927713 - 28927675
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttttc 39  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  28927713 tgtcacaaagtggttgtacaaatatcatttctctttttc 28927675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1068638 - 1068601
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  1068638 tgtcaaaaagtggttgttcaaatatcatttctcttttt 1068601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30927970 - 30928003
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  30927970 tgtcacaaattggttgtacaaatatcatttctct 30928003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45101428 - 45101391
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  45101428 tgtcacaaagtggttgtacaaatatcatttctcttttt 45101391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1065449 - 1065417
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  1065449 tgtcacaaattggttgtacaaatatcatttctc 1065417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5772011 - 5772047
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  5772011 tgtcaaaaaatggttgttcaaatatcatttctctttt 5772047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41541901 - 41541865
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  41541901 tgtcacaaaatggatgttcaaatatcatttctctttt 41541865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44380653 - 44380689
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  44380653 tgtcacaaaatggttgtacaaatatcatttctctttt 44380689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9987983 - 9987946
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  9987983 tgtcaaaaattggttgttcaaatatcatttctcttttt 9987946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27742649 - 27742612
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  27742649 tgtcaaaaagtggttgttcaaatatcatttctcttttt 27742612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 4213094 - 4213066
Alignment:
Q  11 tggttgttcaaatatcatttctctttttc 39  Q
    |||||||||||||||||||||||||||||    
T  4213094 tggttgttcaaatatcatttctctttttc 4213066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13813590 - 13813558
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  13813590 tgtcacaaattggttgtacaaatatcatttctc 13813558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 36439688 - 36439656
Alignment:
Q  2 gtcacaaattggttgttcaaatatcatttctct 34  Q
    |||||||||||||||| ||||||||||||||||    
T  36439688 gtcacaaattggttgtacaaatatcatttctct 36439656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42256492 - 42256456
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  42256492 tgtcacaaaatggttgtacaaatatcatttctctttt 42256456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48325806 - 48325842
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  48325806 tgtcacaaaatggttgtacaaatatcatttctctttt 48325842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48858855 - 48858819
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  48858855 tgtcaaaaagtggttgttcaaatatcatttctctttt 48858819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30864456 - 30864491
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30864456 tgtcacaaattggttgtacaaatatcatttctcttt 30864491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31274568 - 31274603
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31274568 tgtcacaaattggttgtacaaatatcatttctcttt 31274603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25200398 - 25200435
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  25200398 tgtcacaaattggttgtacaaatatcatttctcatttt 25200435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37352018 - 37352055
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  37352018 tgtcacaaagtggttgtacaaatatcatttctcttttt 37352055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44649365 - 44649398
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  44649365 tgtcaaaaattggttgttcaaatatcatttctct 44649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2469735 - 2469699
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  2469735 tgtcacaaagtggttgtacaaatatcatttctctttt 2469699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5208366 - 5208401
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5208366 tgtcacaaattggttgtacaaatatcatttctcttt 5208401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51717321 - 51717355
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctt 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  51717321 tgtcacaaattggttgtacaaatatcatttctctt 51717355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1796398 - 1796365
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  1796398 tgtcacaaattggttgtacaaatatcatttctct 1796365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27001448 - 27001481
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  27001448 tgtcacaaattggttgtacaaatatcatttctct 27001481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43769755 - 43769718
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  43769755 tgtcacaaaatggatgttcaaatatcatttctcttttt 43769718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44368241 - 44368278
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  44368241 tgtcacaaattgattgtacaaatatcatttctcttttt 44368278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50721784 - 50721817
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  50721784 tgtcaaaaattggttgttcaaatatcatttctct 50721817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51377332 - 51377365
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  51377332 tgtcacaaattggttgtacaaatatcatttctct 51377365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51573671 - 51573708
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  51573671 tgtcacaaaatggatgttcaaatatcatttctcttttt 51573708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54000730 - 54000693
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  54000730 tgtcaaaaagtggttgttcaaatatcatttctcttttt 54000693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 55268040 - 55268073
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  55268040 tgtcacaaattggttgtacaaatatcatttctct 55268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7037523 - 7037555
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  7037523 tgtcacaaattggttgtacaaatatcatttctc 7037555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7632501 - 7632537
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7632501 tgtcaaaaattgattgttcaaatatcatttctctttt 7632537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32012928 - 32012896
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  32012928 tgtcaaaaattggttgttcaaatatcatttctc 32012896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33278707 - 33278671
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| | |||||||||||||||||||||||||    
T  33278707 tgtcacaaaatagttgttcaaatatcatttctctttt 33278671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 38134375 - 38134347
Alignment:
Q  11 tggttgttcaaatatcatttctctttttc 39  Q
    |||||||||||||||||||||||||||||    
T  38134375 tggttgttcaaatatcatttctctttttc 38134347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39241329 - 39241361
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  39241329 tgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34144590 - 34144625
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34144590 tgtcacaaattggttgtacaaatatcatttctcttt 34144625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7485491 - 7485457
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctt 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  7485491 tgtcacaaagtggttgttcaaatatcatttctctt 7485457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4738611 - 4738648
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  4738611 tgtcacaaagtggttgtacaaatatcatttctcttttt 4738648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6646867 - 6646830
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  6646867 tgtcacaaaatggatgttcaaatatcatttctcttttt 6646830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27307270 - 27307307
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  27307270 tgtcacaaattgattgtacaaatatcatttctcttttt 27307307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36133006 - 36132969
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  36133006 tgtcacaaagtggttgtacaaatatcatttctcttttt 36132969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37731239 - 37731276
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  37731239 tgtcaaaaagtggttgttcaaatatcatttctcttttt 37731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37966399 - 37966366
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  37966399 tgtcacaaattggttgtacaaatatcatttctct 37966366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25801841 - 25801873
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  25801841 tgtcacaaattggttgtacaaatatcatttctc 25801873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29712011 - 29711975
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29712011 tgtcacaaaatggatgttcaaatatcatttctctttt 29711975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30487508 - 30487540
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  30487508 tgtcacaaattggttgtacaaatatcatttctc 30487540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31296884 - 31296920
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  31296884 tgtcacaaaatggttgtacaaatatcatttctctttt 31296920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 88838 - 88805
Alignment:
Q  3 tcacaaattggttgttcaaatatcatttctcttt 36  Q
    ||||||||||||||| ||||||||||||||||||    
T  88838 tcacaaattggttgtacaaatatcatttctcttt 88805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9954580 - 9954547
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  9954580 tgtcacaaattggttgtacaaatatcatttctct 9954547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17551418 - 17551455
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  17551418 tgtcaaaaaatggttgttcaaatatcatttctcttttt 17551455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2056815 - 2056783
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  2056815 tgtcacaaattggttgtacaaatatcatttctc 2056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 6164234 - 6164262
Alignment:
Q  6 caaattggttgttcaaatatcatttctct 34  Q
    |||||||||||||||||||||||||||||    
T  6164234 caaattggttgttcaaatatcatttctct 6164262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5007759 - 5007796
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  5007759 tgtcacaaaattgttgttcaaatatcatttctcttttt 5007796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9594510 - 9594477
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  9594510 tgtcacaaattggttgtacaaatatcatttctct 9594477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30574416 - 30574453
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  30574416 tgtcacaaattggttgtacaaatatcatttctcatttt 30574453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34270371 - 34270334
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctcttttt 38  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  34270371 tgtcacaaagtggatgttcaaatatcatttctcttttt 34270334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3263547 - 3263579
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  3263547 tgtcacaaattggttgtacaaatatcatttctc 3263579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9599767 - 9599799
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  9599767 tgtcacaaattggttgtacaaatatcatttctc 9599799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12718419 - 12718451
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  12718419 tgtcacaaattggttgtacaaatatcatttctc 12718451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12779645 - 12779677
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  12779645 tgtcacaaattggttgtacaaatatcatttctc 12779677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33823732 - 33823768
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    |||||||| |||||||| |||||||||||||||||||    
T  33823732 tgtcacaagttggttgtacaaatatcatttctctttt 33823768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35301630 - 35301666
Alignment:
Q  1 tgtcacaaattggttgttcaaatatcatttctctttt 37  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  35301630 tgtcacaaaatggttgttcaaatatcatctctctttt 35301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 937 - 905
Alignment:
Q  6 caaattggttgttcaaatatcatttctcttttt 38  Q
    |||||||||||| ||||||||||||||||||||    
T  937 caaattggttgtacaaatatcatttctcttttt 905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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