View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_27 (Length: 227)
Name: NF1608_low_27
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 34873489 - 34873604
Alignment:
| Q |
94 |
cgtgcatattttatcacatgtcaaagtcgacatcaatgcttcacaggttatagtaaatatatattctaacaagaatcaaatatcagaatcataacgacaa |
193 |
Q |
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| T |
34873489 |
cgtgcctattttatcacatgtcaaagtcaacatcaatgcttcacaggttatagtaaatatatattctaacaagaatcaaatatcataatcataacgataa |
34873588 |
T |
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| Q |
194 |
aacacaagatggagca |
209 |
Q |
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| T |
34873589 |
aacacaagatggagca |
34873604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 34872135 - 34872020
Alignment:
| Q |
94 |
cgtgcatattttatcacatgtcaaagtcgacatcaatgcttcacaggttatagtaaatatatattctaacaagaatcaaatatcagaatcataacgacaa |
193 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
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| T |
34872135 |
cgtgcctattttatcacatgtcaaagtcaacatcaatgcttcacatgttatagtaaatatatatttaaacaagaatcaaatatcataatcataacgataa |
34872036 |
T |
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| Q |
194 |
aacacaagatggagca |
209 |
Q |
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| T |
34872035 |
aacacaagatggagca |
34872020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 9918854 - 9918740
Alignment:
| Q |
95 |
gtgcatattttatcacatgtcaaagtcgacatcaatgcttcacaggttatagtaaatatatattctaacaagaatcaaatatcagaatcataacgacaaa |
194 |
Q |
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| T |
9918854 |
gtgcctattttgtcacatgtcaaagccaacaccattgtttcataagttatagtaaatatatattcaaacaagaatcaaatagcataatcataacgataaa |
9918755 |
T |
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| Q |
195 |
acacaagatggagca |
209 |
Q |
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| T |
9918754 |
acacaagatggagca |
9918740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34873397 - 34873466
Alignment:
| Q |
1 |
acatatgcatcacgagttcttttactaaattttttaactatgtgtgtg--ctatttaccatgtcctacag |
68 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||| |
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| T |
34873397 |
acatatgcatcacgagttcttttattaaaatttttaattatgtgtgtgcactatttaccatgtcctacag |
34873466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34872227 - 34872162
Alignment:
| Q |
1 |
acatatgcatcacgagttcttttactaaattttttaacta--tgtgtgtgctatttaccatgtcct |
64 |
Q |
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| T |
34872227 |
acatatgcatcatgagttcttttcctaaaattttcaattatgtgtgtgtgctatttaccgtgtcct |
34872162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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