View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1608_low_3 (Length: 430)

Name: NF1608_low_3
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1608_low_3
NF1608_low_3
[»] chr8 (3 HSPs)
chr8 (16-414)||(31888050-31888445)
chr8 (274-311)||(45197861-45197898)
chr8 (14-54)||(23763286-23763326)
[»] chr2 (6 HSPs)
chr2 (278-352)||(752195-752271)
chr2 (271-346)||(7271975-7272052)
chr2 (16-53)||(6723077-6723114)
chr2 (272-345)||(19002799-19002874)
chr2 (12-52)||(20200725-20200765)
chr2 (16-52)||(25598563-25598599)
[»] chr6 (3 HSPs)
chr6 (13-52)||(34474248-34474287)
chr6 (12-52)||(9111067-9111107)
chr6 (12-52)||(18253340-18253380)
[»] chr1 (5 HSPs)
chr1 (280-352)||(34620663-34620737)
chr1 (14-56)||(30795723-30795765)
chr1 (312-352)||(31575461-31575501)
chr1 (14-52)||(37045147-37045185)
chr1 (16-52)||(17283975-17284011)
[»] chr7 (4 HSPs)
chr7 (278-344)||(46152272-46152340)
chr7 (14-53)||(29237557-29237596)
chr7 (290-352)||(26980236-26980300)
chr7 (16-52)||(47155105-47155141)
[»] scaffold0674 (1 HSPs)
scaffold0674 (13-52)||(6735-6774)
[»] scaffold0549 (1 HSPs)
scaffold0549 (13-52)||(8597-8636)
[»] chr4 (4 HSPs)
chr4 (282-344)||(36363567-36363631)
chr4 (12-52)||(3936647-3936687)
chr4 (16-52)||(23775542-23775578)
chr4 (16-52)||(38453289-38453325)
[»] scaffold0238 (1 HSPs)
scaffold0238 (16-52)||(25413-25449)
[»] chr5 (1 HSPs)
chr5 (12-52)||(16579375-16579415)
[»] chr3 (1 HSPs)
chr3 (318-346)||(23319636-23319664)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 31888050 - 31888445
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaaccttaagacnnnnnnnnnnttagataagataagataaagaaagtaccatatagacacacaatgta 115  Q
    |||||||||||||||||||||||||||| ||||||||||| |||            |||| |||||||||||||||||||| ||||||||||||||||||    
T  31888050 acaatggataatatatgcaaggtccatgattcgaacctta-gacacaaagaaaa--agattagataagataaagaaagtacaatatagacacacaatgta 31888146  T
Q  116 ctaggacattcctcattcacattcaagaaactatacaaacaactaagtcaaccaaaatttgggcatcagtaaactctgagaagctaaaaacgaatagagc 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31888147 ctaggacatttctcattcacattcaagaaactatacaaacaactaagtcaaccaaaatttgggcatcagtaaactctgagaagctaaaaacgaatagagc 31888246  T
Q  216 attaccaatccaatataacttttagagaaatgctaacaagtgttccaagaacatataggacacttgttaaaaagcctaaaaaataaattttgtcttgatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  31888247 attaccaatccaatataacttttagagaaatgctaacaagtgttccaagaacatataggacacttgttaaaaggactaaaaaataaattttgtcttgatt 31888346  T
Q  316 ggtgcattcaacacattgaaacttgaaaaaataatttctaacttttatatatgaacgcaggtatcgaccattcggattctctaaattggttaaactcac 414  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31888347 ggtgtattcaacacattgaaacttgaaaaaataatttctaacttttatatatgaacgcacgtatcgaccattcggattctctaaattggttaaactcac 31888445  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 45197898 - 45197861
Alignment:
Q  274 gacacttgttaaaaagcctaaaaaataaattttgtctt 311  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  45197898 gacacttgttaaaaagtctaaaaaataaactttgtctt 45197861  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 23763326 - 23763286
Alignment:
Q  14 gaacaatggataatatatgcaaggtccatggttcgaacctt 54  Q
    |||||||| ||||||||||||||||||| |||| |||||||    
T  23763326 gaacaatgcataatatatgcaaggtccagggtttgaacctt 23763286  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 752271 - 752195
Alignment:
Q  278 cttgttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaaaataattt 352  Q
    |||||||| ||| ||||| || |||||||||||||  |||| |||||||||||||||||||||||||||| ||||||    
T  752271 cttgttaagaagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagtaattt 752195  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 7271975 - 7272052
Alignment:
Q  271 taggacacttgttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaaaa 346  Q
    ||||||||||||||| |||| ||||| | |||||||||||||  |||| | ||||||||||||| ||| |||||||||    
T  7271975 taggacacttgttaagaagcataaaacagaaattttgtcttggtattgatacattcaacacattaaaatttgaaaaaa 7272052  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 6723114 - 6723077
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacct 53  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  6723114 acaatgtataatatatgcaaggtccagggttcgaacct 6723077  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 19002874 - 19002799
Alignment:
Q  272 aggacacttgttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaaa 345  Q
    |||||||||||||||||| ||||| || ||| |||||||||  | ||||||||||||  |||||||| || |||||    
T  19002874 aggacacttgttaaaaagactaaagaagaaactttgtcttggaaatggtgcattcaatgcattgaaattttaaaaa 19002799  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 20200725 - 20200765
Alignment:
Q  12 atgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  20200725 atgaacaatgcataatatatgcaaggtccagggttcaaacc 20200765  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 25598599 - 25598563
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  25598599 acaatgcataatatatgcaaggtccagggttcgaacc 25598563  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 34474248 - 34474287
Alignment:
Q  13 tgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  34474248 tgaacaatgcataatatatgcaaggtccatggttcgaacc 34474287  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 9111067 - 9111107
Alignment:
Q  12 atgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  9111067 atgaacaatgcataatatatgcaaggtccggggttcgaacc 9111107  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 18253380 - 18253340
Alignment:
Q  12 atgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  18253380 atgaacaatgcataatatatgcaaggtccagggttcaaacc 18253340  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 34620737 - 34620663
Alignment:
Q  280 tgttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaaaataattt 352  Q
    |||||| ||||||||| || ||| || ||||||  |||| |||||||||||||||||||||||||||| ||||||    
T  34620737 tgttaagaagcctaaagaagaaagttcgtcttgggattgatgcattcaacacattgaaacttgaaaaagtaattt 34620663  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 30795723 - 30795765
Alignment:
Q  14 gaacaatggataatatatgcaaggtccatggttcgaaccttaa 56  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  30795723 gaacaatgcataatatatgcaaggtccaaggttcgaaccttaa 30795765  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 31575501 - 31575461
Alignment:
Q  312 gattggtgcattcaacacattgaaacttgaaaaaataattt 352  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  31575501 gattgatgcattcaacacattgaaacttgaaaaagtaattt 31575461  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 37045185 - 37045147
Alignment:
Q  14 gaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  37045185 gaacaatgcataatatatgcaaggtccagggttcgaacc 37045147  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 17283975 - 17284011
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  17283975 acaatgcataatatatgcaaggtccagggttcgaacc 17284011  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 46152340 - 46152272
Alignment:
Q  278 cttgttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaa 344  Q
    |||||||| ||||||||| || ||||||| |||||  |||| ||||||||||||||||||| |||||||    
T  46152340 cttgttaagaagcctaaagaagaaattttttcttgggattgatgcattcaacacattgaaatttgaaaa 46152272  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 29237596 - 29237557
Alignment:
Q  14 gaacaatggataatatatgcaaggtccatggttcgaacct 53  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  29237596 gaacaatgcataatatatgcaaggtccagggttcgaacct 29237557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 26980300 - 26980236
Alignment:
Q  290 cctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaaaataattt 352  Q
    |||||| || |||||||||||||  |||| ||||||||| ||||| |||||||||||| ||||||    
T  26980300 cctaaagaagaaattttgtcttgggattgatgcattcaatacattaaaacttgaaaaactaattt 26980236  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 47155141 - 47155105
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  47155141 acaatgcataatatatgcaaggtccagggttcgaacc 47155105  T

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Target: scaffold0674 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 6735 - 6774
Alignment:
Q  13 tgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  6735 tgaacaatgcataatatatgcaagttccatggttcgaacc 6774  T

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Target: scaffold0549 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 8636 - 8597
Alignment:
Q  13 tgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  8636 tgaacaatgcataatatatgcaagttccatggttcgaacc 8597  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 36363567 - 36363631
Alignment:
Q  282 ttaaaaagcctaaaaaataaattttgtcttg--attggtgcattcaacacattgaaacttgaaaa 344  Q
    ||||||||  |||| || ||||||||| |||  |||| |||||||||||||||||||||||||||    
T  36363567 ttaaaaagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaacttgaaaa 36363631  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 3936647 - 3936687
Alignment:
Q  12 atgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  3936647 atgaacaatgcataatatatgcaaggtccggggttcgaacc 3936687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 23775542 - 23775578
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  23775542 acaatgcataatatatgcaaggtccagggttcgaacc 23775578  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 38453289 - 38453325
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  38453289 acaatgcataatatatgcaaggtccagggttcgaacc 38453325  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 25413 - 25449
Alignment:
Q  16 acaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  25413 acaatgcataatatatgcaaggtccagggttcgaacc 25449  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 16579415 - 16579375
Alignment:
Q  12 atgaacaatggataatatatgcaaggtccatggttcgaacc 52  Q
    |||||||||| |||||||||||||||||| |||||| ||||    
T  16579415 atgaacaatgcataatatatgcaaggtccgtggttcaaacc 16579375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 23319636 - 23319664
Alignment:
Q  318 tgcattcaacacattgaaacttgaaaaaa 346  Q
    |||||||||||||||||||||||||||||    
T  23319636 tgcattcaacacattgaaacttgaaaaaa 23319664  T

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