View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_5 (Length: 325)
Name: NF1608_low_5
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 50625253 - 50625543
Alignment:
| Q |
18 |
gtgttggcttgaggattggaatgtaggattgaactgcatagatcagaatttggtgtgtttttgcatatatcatccaccaaatcatcaacttcaacgttca |
117 |
Q |
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| T |
50625253 |
gtgttggcttgaggattggaatgtaggattgaactgcatagatcagaatttggtgtctttttgcatatatcatccaccaaatcatcaacttcaacgttca |
50625352 |
T |
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| Q |
118 |
tttgagtaaaggattgagtgagttggagnnnnnnncatgaaagaagaagagtataaagagggaaaaaggacataaagttagttgaggctctcttcatttt |
217 |
Q |
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| T |
50625353 |
tttgagtaaaggattgagtgagtttgagaaaaaaacatgaaagaagaagagtataaagagggaaaaaggacataaagttagttgaggctctcttcatttt |
50625452 |
T |
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| Q |
218 |
ttctctcttgttactagaaatcaagagtgtgttgtttttgtggaatttatgaacaatgttcttactttgggtgttatttaaggttagtttg |
308 |
Q |
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| T |
50625453 |
ttctctcttgttactagaaatcaagagtgtgttgtttttgtggaatttatgaacaatgttcttactttcggtgttatttaaggttagtttg |
50625543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 50619957 - 50620180
Alignment:
| Q |
21 |
ttggcttgaggattggaatgtaggattgaactgcatagatcagaatttggtgtgtttttgcatatatcatccaccaaatcatcaacttcaacgttcattt |
120 |
Q |
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| T |
50619957 |
ttggcttgaggactggaatgtaggattgaactgcatagatcagaatttggtgtctttttgcatatatcatccaccaaatcatcaacttcagcgtttggta |
50620056 |
T |
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| Q |
121 |
gagtaaaggattgagtgagttggag-nnnnnnncatgaaagaagaagagtataaagagggaaaaaggacataaagttagttgaggctctcttca-ttttt |
218 |
Q |
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| T |
50620057 |
tagtaaaagattgagtgtgttggagaaaaaaaacaagaaagaagaagagtataaagagggaaaaaggacataaaattagttgaggctctcttcatttttt |
50620156 |
T |
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| Q |
219 |
tctctcttgttactagaaatcaag |
242 |
Q |
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| T |
50620157 |
tccctcttgttactagaaatcaag |
50620180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 50622728 - 50622860
Alignment:
| Q |
18 |
gtgttggcttgaggattggaatgtaggattgaactgcatagatcagaat------ttggtgtgtttttgcatatatcatccaccaaatcatcaacttcaa |
111 |
Q |
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| T |
50622728 |
gtgttggcttgacgattggaatgtaggactgaactgcataagtcaaagtcaaagtttggggtctttt-gcatatgtcatccaccaaatcatcaacttcag |
50622826 |
T |
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| Q |
112 |
cgttcatttgagtaaaggattgagtgagttggag |
145 |
Q |
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| T |
50622827 |
cgttcatttgagtaaaggattgattgagttggag |
50622860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 50622925 - 50623003
Alignment:
| Q |
230 |
actagaaatcaagagtgtgttgtttttgtggaatttatgaacaatgttcttactttgggtgttatttaaggttagtttg |
308 |
Q |
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| T |
50622925 |
actaggaatcaagagtgtgatgtttttgcggaatgaacgacaaatgttcatacttggggtgcaatttaaggttagtttg |
50623003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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