View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1608_low_6 (Length: 316)
Name: NF1608_low_6
Description: NF1608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1608_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 5305203 - 5305509
Alignment:
| Q |
12 |
atgaagagtatcgaaagtcttcccgacaatggtggttagacaacatgtgttgttgagtgaagcaacaacggcaatacaagcgtatgtgaatgnnnnnnnn |
111 |
Q |
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| T |
5305203 |
atgaagagtatcgaaagtcttcccgacaatggtggtcagacaacatgtgttgttgagtgaagcaacaacggcaatacaagtgcatgtgaatgaaaaaaaa |
5305302 |
T |
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| Q |
112 |
nn-tcgcttgtggaggagcatgccatatgaatgaaatgagctcacc-ttaaaaggaagattgttgtataacaaatgtgagttgaaaatctcacgtctaat |
209 |
Q |
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| T |
5305303 |
aaatcgcttgtggaggagcatgccatatgaatgaaatgagctcacccttaaaagaaagattgttgtataacaaatgtgagttgaaaatctcacgtctaat |
5305402 |
T |
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| Q |
210 |
gaaaatgtgaataatgaataatacatagagacacccataaacccaacaattaaaattaaagtatcattgagtgttggctcaaatataattttaaaagaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5305403 |
gaaaatgtgaataatgaataatacatagagacacccataaacccaacaattaaaattaaagtatcattgagtgttggctcaaatttaattttaaaagaga |
5305502 |
T |
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| Q |
310 |
agtcaat |
316 |
Q |
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||||||| |
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| T |
5305503 |
agtcaat |
5305509 |
T |
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