View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609-INSERTION-2 (Length: 284)
Name: NF1609-INSERTION-2
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609-INSERTION-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 88 - 284
Target Start/End: Original strand, 7493970 - 7494174
Alignment:
| Q |
88 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacaattttttctctaa |
187 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
7493970 |
caataggcaggaaaaggccatacttcatccataaatctcaaaagtacatgttaatatacataatcacagtcaacaattagtggcacgattttttctctaa |
7494069 |
T |
|
| Q |
188 |
aaagaagnnnnnnnnt--------ggtgtggcatttctcttttagagctaaaatatttgatttagctttcttaaaaacactcaaccccgtactgagattt |
279 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494070 |
aaagaaggaaaaaaatggtgtgggggtgtggcatttctcttttagagctaaaatatttgatttagctttcttaaaaacactcaaccccgtactgagattt |
7494169 |
T |
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| Q |
280 |
gggga |
284 |
Q |
| |
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||||| |
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| T |
7494170 |
gggga |
7494174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 284
Target Start/End: Original strand, 24544611 - 24544816
Alignment:
| Q |
88 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacaattttttctctaa |
187 |
Q |
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|||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24544611 |
caataggcaggaaaaggccatacttcatcaataaatctcaaaagtacctgttaatatacataatcacagtcaacaattagtggcacaattttttctctaa |
24544710 |
T |
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| Q |
188 |
aaagaag---------nnnnnnnntggtgtggcatttctcttttagagctaaaatatttgatttagctttcttaaaaacactcaaccccgtactgagatt |
278 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24544711 |
aaagaaggaaaaaaaatggtgtgggggtgtggcatttctcttttagagctaaaatatttgatttagctttcttaaaaacactcaaccccgtactaagatt |
24544810 |
T |
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| Q |
279 |
tgggga |
284 |
Q |
| |
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|||||| |
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| T |
24544811 |
tgggga |
24544816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 5776437 - 5776543
Alignment:
| Q |
88 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacaattttttctctaa |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5776437 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacaattttttctctaa |
5776536 |
T |
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| Q |
188 |
aaagaag |
194 |
Q |
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||||||| |
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| T |
5776537 |
aaagaag |
5776543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 33979676 - 33979570
Alignment:
| Q |
88 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacaattttttctctaa |
187 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33979676 |
caataggcaggaaaagcccatactgcatccataaatctcaaaagtacttgttaatatacataatcacagccaacaattagtggcacgattttttctctaa |
33979577 |
T |
|
| Q |
188 |
aaagaag |
194 |
Q |
| |
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||||||| |
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| T |
33979576 |
aaagaag |
33979570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 33979544 - 33979506
Alignment:
| Q |
246 |
tttcttaaaaacactcaaccccgtactgagatttgggga |
284 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
33979544 |
tttcttaaaaacactcaaccccgtattgagatttgggga |
33979506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 54159640 - 54159716
Alignment:
| Q |
204 |
ggtgtggcatttctcttttagagctaaaatatttgatttagctttcttaaaaacactcaaccccgtactgagatttgg |
281 |
Q |
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|||||||||| ||| ||||||| ||| ||| |||| |||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
54159640 |
ggtgtggcatatct-ttttagatctataatttttgttttagctttcctaaaaacactcaatcccgtattgagatttgg |
54159716 |
T |
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