View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609-INSERTION-3 (Length: 401)
Name: NF1609-INSERTION-3
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609-INSERTION-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 43815086 - 43814694
Alignment:
| Q |
8 |
attaagagctggctctttaaacagatttggaagaaaattcatcgatgcaagcaatggccatgaagtatgtacttgtagaaactcggttttttcgtttatc |
107 |
Q |
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| T |
43815086 |
attaagagctggctctttaaacagatttgaaagaaaattcaccgatgcaagcaatggccatgaagtatgtacttgtagaaactcgattttttcgtttatc |
43814987 |
T |
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| Q |
108 |
aagaattcagtttggctcaatatcaggggttcatattagacaaacttatttctttaaagtgataattttgtgagatcattatccttttttcatttaaagt |
207 |
Q |
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| T |
43814986 |
aagaattcagtttggctcaatattaggg-ttcatattagacaaacttatttctttaaagtgataattttgtgagatcattatccttttttcatttaaagt |
43814888 |
T |
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| Q |
208 |
gatcaatgagtttcatggcccctatttaaattattgtttcatcatgcacatataagcaagagtctatcttttgaattcatttatttatatctttgctcca |
307 |
Q |
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| T |
43814887 |
gatcaatgagtttcatggcccctatttaaattattgtttcatcatgcacatataagcaagagtctatcttttgaattcatttatttatatctttgctcca |
43814788 |
T |
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| Q |
308 |
acttatttttatcttctatagcaaaaaacttaaacacaaaccaacattaaacttatgctattttcaaaattaaataacatatgggttcttctta |
401 |
Q |
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| T |
43814787 |
acttatttttatcttctatagcaaaaaacttaaacacaaaccaacattaaacttatgctattttcaaaattaaataacatatgggttcttctta |
43814694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 29234416 - 29234488
Alignment:
| Q |
283 |
ttcatttatttatatctttgctccaacttatttttatcttctatagcaaaaaacttaaacacaaaccaacatta |
356 |
Q |
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| T |
29234416 |
ttcatttatttaaatctttgctctgact-atttttatcttctaaaacaagaaacttaaccacaaaccaatatta |
29234488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 29341639 - 29341703
Alignment:
| Q |
287 |
tttatttatatctttgctccaacttatttttatcttctatagcaaaaaacttaaacacaaaccaa |
351 |
Q |
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| T |
29341639 |
tttatttatatctttgatccaactgtttcttattttctatagcaagaaagttaaacaccaaccaa |
29341703 |
T |
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