View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609-INSERTION-5 (Length: 344)
Name: NF1609-INSERTION-5
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609-INSERTION-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 43739577 - 43739332
Alignment:
| Q |
99 |
tttttaatcctccgattatgagagaaagaggaccttaataattcgaagttcgaccataaaataagtgaaatatgaataataattgtttcatttaaaaatc |
198 |
Q |
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| T |
43739577 |
tttttaatcctccgattctgagagaaagaggaccttaataattcgaagttcgaccataaaataaatgaaatatgaataataattgttttatttaaaaatc |
43739478 |
T |
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| Q |
199 |
gaacttgagttcaacttcatttatactccattgaaaggaaacttaaaatgtccttttaatattgggaggcgaattatatcattgaacaccactggtaagg |
298 |
Q |
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| T |
43739477 |
gaactcgagttcaacttcatttatactccattaaaaagaaacttaaaatgtccttttaatattgggaggcgaattatatcattgaacaccactggtaagg |
43739378 |
T |
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| Q |
299 |
tcaaattatgtttttgatcttttaagtttcattttatcacgttaag |
344 |
Q |
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| T |
43739377 |
tcaaattatgtttttgatcttttaagtttcattttatcacgttaag |
43739332 |
T |
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