View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609-INSERTION-6 (Length: 538)
Name: NF1609-INSERTION-6
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609-INSERTION-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Complemental strand, 32393066 - 32392536
Alignment:
| Q |
8 |
aattaaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagatccaaaagcttccctcatcacactagcatacgttgtcttt |
107 |
Q |
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| T |
32393066 |
aattaaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagatccaaaagcttccctcatcacactagcatacgttgtcttt |
32392967 |
T |
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| Q |
108 |
acacctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaagcacagccacgattagaattaaggcaagggcgggaaacactccaagaactt |
207 |
Q |
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| T |
32392966 |
acacctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaagcacagccacgattagaattaaggcaagggcgggaaacactccaagaactt |
32392867 |
T |
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| Q |
208 |
ttagaattgccggaatggacatgattccagaaccaataatgcttgtggcgacattgagcacggcgccggggatggtacctggcgccggcgccaattttga |
307 |
Q |
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| T |
32392866 |
ttagaattgccggaatggacatgattccagaaccaataatgcttgtggcgacattgagcacggcgccggggatggtaccgggcgccggcgccaattttga |
32392767 |
T |
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| Q |
308 |
tccggtcaatagagggatatggactccggtagacggtgacattccggcagacggtggtgaaattatggtggagagtttgagaaggaaaggtggagttggt |
407 |
Q |
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| T |
32392766 |
tccggtcaatagagggatgtggactccggtagacggtgacattccggcagacggtggtgaaattatggtggagagtttgagaaggaaaggtggagttggt |
32392667 |
T |
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| Q |
408 |
tacattagcatttcttatgttaccatccatttatattacttagnnnnnnnttgatacaggttcacttggttggatttgcgtccacatgcatagatttctt |
507 |
Q |
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| T |
32392666 |
tacattagcatttcttatgttaccatccatttatattacttggaaaaaaattgatacaggttcatttggttggatttgcgtccacatgcatagacttctt |
32392567 |
T |
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| Q |
508 |
ctcatgaaacacatgatatgttatagtacta |
538 |
Q |
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| T |
32392566 |
ttcatgaaacacatgatatgttatagtacta |
32392536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 32395122 - 32394788
Alignment:
| Q |
11 |
taaacccccaaagttgttgattatgacaataactttagtgattaatcctccaacagatccaaaagcttccctcatcacactagcatacgttgtctttaca |
110 |
Q |
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| T |
32395122 |
taaacccccaaagttagtgattataacacaaacttgagcgcttaaagctccaacggacccaaaagcttccttcataacaccagagtatgtcgtggttaca |
32395023 |
T |
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| Q |
111 |
cctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaagcacagccacgattagaattaaggcaagggcgggaaacactccaagaactttta |
210 |
Q |
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| T |
32395022 |
ccagcatgtgtaaaacgcatgagaaaatcaacagaaacttcggcgagcacggcaacaataagaatcaaggcgaaggaaggaagcacaccgagaactttga |
32394923 |
T |
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| Q |
211 |
gaattgccggaatggacatgattccagaaccaataatgcttgtggcgacattgagcacggcgccggggatggtacctggcgccggcgccaattttgatcc |
310 |
Q |
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| T |
32394922 |
gaatcgccggaattgacatgattccggagccaattatgctggtggcgacattgaatacggcaccggggattgaaccaggaaccgccgccggatttgatcc |
32394823 |
T |
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| Q |
311 |
ggtcaatagagggatatggactccggtagacggtg |
345 |
Q |
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| T |
32394822 |
ggtcaagagaggaacgtggactccggcagacggtg |
32394788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 1971706 - 1971501
Alignment:
| Q |
58 |
ctccaacagatccaaaagcttccctcatcacactagcatacgttgtctttacacctgcttctgtaaaacgcatgagaaaatccactgaaacttcagcaag |
157 |
Q |
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| T |
1971706 |
ctccaacagacccaaaagcttccttcataacaccaaagtacgt-gtggttacaccggcatgcgtaaaacgcatgagaaaatcaacagaaacttcagcgag |
1971608 |
T |
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| Q |
158 |
cacagccacgattagaattaaggcaagggcgggaaacactccaagaacttttagaattgccggaatggacatgattccagaaccaataatgcttgtggcg |
257 |
Q |
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| T |
1971607 |
cacatcgatgataagaatcaaggcgaaagaaggaagcacgccgagaactttgagaatcgccggaatttaaatgattccggagccgattatgctgggggcg |
1971508 |
T |
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| Q |
258 |
acattga |
264 |
Q |
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| T |
1971507 |
acattga |
1971501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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