View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1609-INSERTION-7 (Length: 514)
Name: NF1609-INSERTION-7
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609-INSERTION-7 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Original strand, 12359188 - 12359678
Alignment:
| Q |
8 |
tagatgacactgtttagcatcgaattttcatgcaatcaatttaatgttcagtatattgctgtcagacacatttttaatgcacaattctttacgattttaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12359188 |
tagatgacactgtttagcatcgaattttcatgcaatcaatttaatgttcagtatattgctgtcagacacatttttaatgcacaattctttacgattttaa |
12359287 |
T |
|
| Q |
108 |
gtgtattgttcaaggaatctactataataaagtttctgttgaaaatcttggggagtttgatgagcgttcaaagtggcaatgaggtaaatgtttaggacac |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||| |
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| T |
12359288 |
gtgtattgttcaaggaatctactataataaagtttgtgttgaaaatcttggggaatttgatgagcgttgaaagtggcaatgcggtaaacgtttaggacac |
12359387 |
T |
|
| Q |
208 |
taacagatttagacactacatttccacttaaaattttaatacattaactacatgtgtcctctcttttatatatctcttctcttatatacctcatttctaa |
307 |
Q |
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||| ||||||| | ||||||| |||||| ||||| |||| |||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
12359388 |
taagagatttaaatactacatctccactcaaaatcttaagacatcaactatatgtgtcctctcttttatatatctcctctcttatatgcctcatttctaa |
12359487 |
T |
|
| Q |
308 |
tcgatatcgggcataatcaatcacacttgatttcaaatttattcaatcgtaacaatttgaaggatttcatatcttaaaaataagttatttgatgcctaaa |
407 |
Q |
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||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
12359488 |
tcgatgtcgggtataatcactcacacttgatttcaaatttattcaatcgtaacaatttgaaggatttcatatcttaaaaataaattatttgatacctaaa |
12359587 |
T |
|
| Q |
408 |
attcacaattaaataacttaaagaatgtaagtgacacgaaacaaaattcaacatgttataatcaaataactt-aaagacctaaagtgtaac |
497 |
Q |
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| T |
12359588 |
attcacaattaaataacttaaagaatgtaagtgacacgaaacaaaattcaacatgttataatcaaataatttaaaagacccaaagtgtaac |
12359678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 26706309 - 26706231
Alignment:
| Q |
355 |
cgtaacaatttgaaggatttcatatcttaaaaata--agttatttgatgcctaaaattcacaattaaataacttaaagaa |
432 |
Q |
| |
|
|||||||||||| || ||||||| ||||| ||||| ||||||| || |||||||| | ||||||||||||||||||||| |
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| T |
26706309 |
cgtaacaatttggag-atttcatgtcttacaaatataagttattcgaggcctaaaagttacaattaaataacttaaagaa |
26706231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 29954890 - 29954977
Alignment:
| Q |
346 |
ttattcaatcgtaacaatttgaaggatttcatatcttaaaaa--taagttatttgatgcctaaaattcacaattaaataacttaaaga |
431 |
Q |
| |
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|
| T |
29954890 |
ttatttaaccgtaataatttggagaatttcatatcttaaaaatgtaagttattctgggactaaaagttacaattaaataacttaaaga |
29954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 47726558 - 47726483
Alignment:
| Q |
357 |
taacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaag |
430 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||| | |||||| | ||||||||||||||||||| |
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| T |
47726558 |
taacaatttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaag |
47726483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 47747864 - 47747789
Alignment:
| Q |
357 |
taacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaag |
430 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||| | |||||| | ||||||||||||||||||| |
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| T |
47747864 |
taacaatttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttacaattaaataacttaaag |
47747789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 196137 - 196215
Alignment:
| Q |
355 |
cgtaacaatttgaaggatttcatatcttaaaaa--taagttatttgatgcctaaaattcacaattaaataacttaaaga |
431 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||||| || ||||| | |||||||||||||||||||| |
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| T |
196137 |
cgtaacaatttgaggtatttcatatcttaaaaatgtaagttattcagggcttaaaagttacaattaaataacttaaaga |
196215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 429
Target Start/End: Original strand, 16419725 - 16419810
Alignment:
| Q |
346 |
ttattcaatcgtaacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaa |
429 |
Q |
| |
|
||||| || ||||||||||||| |||||| | |||||| |||| |||||||||| |||||||| | ||||||||||||||||| |
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| T |
16419725 |
ttatttaaccgtaacaatttgagggattttagatcttagaaatgtaagttatttggggcctaaaagtttcaattaaataacttaaa |
16419810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 22519513 - 22519427
Alignment:
| Q |
346 |
ttattcaatcgtaacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaag |
430 |
Q |
| |
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||||| || |||| ||||||| |||||||| ||||||||||| |||||||||| ||||||| | ||||||||||||||||||| |
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| T |
22519513 |
ttatttaaccgtagcaatttgggggatttcagatcttaaaaatgtaagttatttgggacctaaaagttacaattaaataacttaaag |
22519427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 23183836 - 23183911
Alignment:
| Q |
356 |
gtaacaatttgaaggatttcatatcttaaaa--ataagttatttgatgcc-taaaattcacaattaaataacttaaa |
429 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||||||| || ||| ||||||| | |||||||||||||||| |
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| T |
23183836 |
gtaacaatttggaggatttcaaatcttaaaaatataagttattcgaggccttaaaattga-aattaaataacttaaa |
23183911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 42005286 - 42005357
Alignment:
| Q |
359 |
acaatttgaaggatttcatatcttaaaaa--taagttatttgatgcctaaaattcacaattaaataacttaaa |
429 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||| | ||||| | |||||||||||||||||| |
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|
| T |
42005286 |
acaatttgaaggatttcacatcttaaaaatgtaaattatttgacg-ataaaagttacaattaaataacttaaa |
42005357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 48194356 - 48194261
Alignment:
| Q |
346 |
ttattcaatcgtaacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaagaatgtaagt |
439 |
Q |
| |
|
||||| || ||||||||||||| ||||||| |||||| |||| ||||| || | || ||||||| ||||||||||||||||||| || ||||| |
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|
| T |
48194356 |
ttatttaaccgtaacaatttgagagatttcagatcttagaaatttaagtttttcaacgcttaaaatttacaattaaataacttaaaggatctaagt |
48194261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 2277160 - 2277084
Alignment:
| Q |
355 |
cgtaacaatttgaaggatttcatatcttaaaaat-aagttatttgatgcctaaaattcacaattaaataacttaaag |
430 |
Q |
| |
|
||||||||||| || ||||||| || | ||||| |||||||| |||| |||||| | ||||||||||||||||||| |
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|
| T |
2277160 |
cgtaacaatttaaacgatttcagatttacaaaatcaagttattcgatgtctaaaagttacaattaaataacttaaag |
2277084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 439
Target Start/End: Complemental strand, 51265856 - 51265761
Alignment:
| Q |
346 |
ttattcaatcgtaacaatttgaaggatttcatatcttaaaaat--aagttatttgatgcctaaaattcacaattaaataacttaaagaatgtaagt |
439 |
Q |
| |
|
||||| || ||||||||||||| ||||||| ||||||||||| ||||| || | || | ||||| ||||||||||||||||||| || ||||| |
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|
| T |
51265856 |
ttatttaaccgtaacaatttgagagatttcagatcttaaaaatttaagtttttcaaggcttgaaatttacaattaaataacttaaaggatctaagt |
51265761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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