View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16090_high_1 (Length: 587)
Name: NF16090_high_1
Description: NF16090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16090_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Complemental strand, 11390438 - 11389881
Alignment:
| Q |
12 |
agcatagggtaataacaatagtagtaatatagtgaatttaggaaataaatagtagtaatattgacaggccatctaagctcttcaagtgatggcaactaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11390438 |
agcatagggtaataacaatagtagtaatatagtgcatttaggaaataaatagtagtaatattgacaagccatctaagctcttcaagtgatggcaactaac |
11390339 |
T |
|
| Q |
112 |
gaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgagagtgaaaacatcctttgtggagaaaccagagaaggaaccacaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||| |
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|
| T |
11390338 |
gaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgaaagtgaaaacatcctttgtggagaaactacagaaggaaccagaat |
11390239 |
T |
|
| Q |
212 |
accttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaacattattgaagtagggga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11390238 |
accttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaacattattgaagtagggga |
11390139 |
T |
|
| Q |
312 |
agacacttgttaggtagaaattaagccagcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaatacaaagtttatatgcta |
411 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390138 |
agacacttgtcaggtagaaattaagcaggcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaatacaaagtttatatgcta |
11390039 |
T |
|
| Q |
412 |
gtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaagaggactacatatcactta |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
11390038 |
gtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaagaggactacatatcagtta |
11389939 |
T |
|
| Q |
512 |
ctgtagagtgtcgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaagg |
569 |
Q |
| |
|
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11389938 |
ctgaagagggttgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaagg |
11389881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Complemental strand, 11407099 - 11406542
Alignment:
| Q |
12 |
agcatagggtaataacaatagtagtaatatagtgaatttaggaaataaatagtagtaatattgacaggccatctaagctcttcaagtgatggcaactaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11407099 |
agcatagggtaataacaatagtagtaatatagtgcatttaggaaataaatagtagtaatattgacaagccatctaagctcttcaagtgatggcaactaac |
11407000 |
T |
|
| Q |
112 |
gaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgagagtgaaaacatcctttgtggagaaaccagagaaggaaccacaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
11406999 |
gaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgaaagtgaaaacatcctttgtggagaaactacagaaggaaccagaat |
11406900 |
T |
|
| Q |
212 |
accttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaacattattgaagtagggga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11406899 |
accttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaacattattgaagtagggga |
11406800 |
T |
|
| Q |
312 |
agacacttgttaggtagaaattaagccagcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaatacaaagtttatatgcta |
411 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11406799 |
agacacttgtcaggtagaaattaagcaggcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaatacaaagtttatatgcta |
11406700 |
T |
|
| Q |
412 |
gtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaagaggactacatatcactta |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11406699 |
gtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaagaggactacatatcagtta |
11406600 |
T |
|
| Q |
512 |
ctgtagagtgtcgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaagg |
569 |
Q |
| |
|
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11406599 |
ctgaagagggttgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaagg |
11406542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 100 - 541
Target Start/End: Original strand, 24253157 - 24253598
Alignment:
| Q |
100 |
atggcaactaacgaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgagagtgaaaacatcctttgtggagaaaccagaga |
199 |
Q |
| |
|
|||||||| || ||||||| || ||||||| | |||||||||||||| ||||| ||||| ||||||| |||| ||||||||||||||| |||| |||| |
|
|
| T |
24253157 |
atggcaacaaaagaggaaactggagaacaggaatgggagcacttgatatcactattcaagaaggtgaaggtgacaacatcctttgtggataaacaggaga |
24253256 |
T |
|
| Q |
200 |
aggaaccacaataccttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaacattat |
299 |
Q |
| |
|
||||||| |||||| || ||||| |||||| |||||| || ||| |||||| ||| | ||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
24253257 |
tggaaccaggatacctcgagtttcagaaggaaatagatcgtaagcggcaggagccgcaggagccaaaaccaactggaaaataagagcatatcaacgctat |
24253356 |
T |
|
| Q |
300 |
tgaagtaggggaagacacttgttaggtagaaattaagccagcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaatacaaa |
399 |
Q |
| |
|
||||||||||||||||||| || ||| | ||| ||||| |||||||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
24253357 |
tgaagtaggggaagacactcgtcaggcacaaactaagcaagcaaagaaagaagtagctgaagaattcaaggagcttcaccagatcctcgaaaagtaccaa |
24253456 |
T |
|
| Q |
400 |
gtttatatgctagtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaagaggact |
499 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||| |
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|
| T |
24253457 |
gttcatatgccaaaagaggaaatggcgaagcaaagtccgtgctgcatcaattttctgcaagaattgctgaaaacaacaatggattcatctgaggaggact |
24253556 |
T |
|
| Q |
500 |
acatatcacttactgtagagtgtcgcatcaacttcgaggtac |
541 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24253557 |
acataacacttactgaagagtgtcgcatcaacttcgaggtac |
24253598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 94 - 539
Target Start/End: Original strand, 22567012 - 22567457
Alignment:
| Q |
94 |
caagtgatggcaactaacgaggaaattgaagaacagaactgggagcacttgatttcactgttcaaaaaggtgagagtgaaaacatcctttgtggagaaac |
193 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| ||||| ||||||||||| ||| | ||||| ||||||| |||| |||||| ||||||||||||| |
|
|
| T |
22567012 |
caagtgatggcaactaaagaggaaactgaggaacaaaactgagagcacttgatctcattattcaagaaggtgacggtgacaacatcatttgtggagaaac |
22567111 |
T |
|
| Q |
194 |
cagagaaggaaccacaataccttgattttcataaggaagtagatctaaaacggtaggagctgcataaatcaaaaccaactagaaaagaagagcatatcaa |
293 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||||||||||||| || | | |||||||||| ||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
22567112 |
tagagaaggaaccaagatacctcgagtttcagaaggaagtagatctcaagcagcaggagctgcagaaatcaaaaccaactggaaaagatgagcagatcaa |
22567211 |
T |
|
| Q |
294 |
cattattgaagtaggggaagacacttgttaggtagaaattaagccagcaaagaaagaagtagcggaaaacttcaaggagctccaccagatcctcgaaaaa |
393 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||| |||||||||||| ||| || | ||||||||||| |||||||||||||||||| |
|
|
| T |
22567212 |
tgctattgaagtaggggaagacactcgccaggcagaaattaagtaggcaaagaaagaattagatgacgagttcaaggagcttcaccagatcctcgaaaaa |
22567311 |
T |
|
| Q |
394 |
tacaaagtttatatgctagtagaggaaatggcgaagcaaagtatgtgttgcatcaattttctgcaagaactgctgaaaacaacagtgaattcatctgaag |
493 |
Q |
| |
|
||| ||||| |||| |||| |||||||| |||||||||| || |||||| ||||| ||||||| ||||||||| || | ||||||||| | |
|
|
| T |
22567312 |
taccaagttcatatcacagtaaaggaaatgatgaagcaaagtccatgcaacatcaactttctataagaactactgaaaacagcaattgattcatctgcgg |
22567411 |
T |
|
| Q |
494 |
aggactacatatcacttactgtagagtgtcgcatcaacttcgaggt |
539 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
22567412 |
aggactacgtatcacttactgaagagtgtcacattaacttcgaggt |
22567457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 3398636 - 3398682
Alignment:
| Q |
100 |
atggcaactaacgaggaaattgaagaacagaactgggagcacttgat |
146 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
3398636 |
atggaaactaaagaggaaatggaagaacagaactaggagcacttgat |
3398682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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