View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16090_low_2 (Length: 440)
Name: NF16090_low_2
Description: NF16090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16090_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 42950645 - 42951063
Alignment:
| Q |
16 |
aaaacttctctccacatgcatcataccactattttcataagtatcggatggtgaatcatcactaacatcttcatcaacatcggatctagtaattgtgcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950645 |
aaaacttctctccacatgcatcataccactattttcataagcatcggatggtgaatcatcactaacatcttcatcaacatcggatctagtaattgtgcta |
42950744 |
T |
|
| Q |
116 |
tcagaactaccaccaacttctgaacttgagcttcttctgcgttgcttgtatttatcatcatcacccataggcgaaaattcatcagaagcccactttgact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42950745 |
tcagaactaccaccaacttctgaacttgagcttcttctgcgttgcttgtatttatcatcatcaccgataggcgaaaattcatcagaagcccactttgact |
42950844 |
T |
|
| Q |
216 |
ttgtgagcttgtatttaccatcatctgccatcggtgaaagatcatcatcacaagcccacttcgactttgtgatgttccacccctgcatatcactttcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950845 |
ttgtgagcttgtatttaccatcatctgccatcggtgaaagatcatcatcacaagcccacttcgactttgtgatgttccacccctgcatatcactttcttc |
42950944 |
T |
|
| Q |
316 |
atccacacaagacgaattcttcgaagatccacttaaaacatcatcaccttcaggactttgttcttccacgtataactttgtgacaccatctttggaagag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950945 |
atccacacaagacgaattcttcgaagatccacttaaaacatcatcaccttcagaactttgttcttccacgtataactttgtgacaccatctttggaagag |
42951044 |
T |
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| Q |
416 |
ttcttccccttcatctcag |
434 |
Q |
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|||||||||||| |||||| |
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| T |
42951045 |
ttcttccccttcttctcag |
42951063 |
T |
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Back To:
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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 6170961 - 6170908
Alignment:
| Q |
81 |
catcttcatcaacatcggatctagtaattgtgctatcagaactaccaccaactt |
134 |
Q |
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| T |
6170961 |
catcttcatcaacatcggatctagtaattgtgctatcagaactatcaccaactt |
6170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 6170130 - 6170079
Alignment:
| Q |
81 |
catcttcatcaacatcggatctagtaattgtgctatcagaactaccaccaac |
132 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6170130 |
catcttcatcaacatcggatctagtaattgtgttatcagaactaccaccaac |
6170079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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