View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16090_low_3 (Length: 412)
Name: NF16090_low_3
Description: NF16090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16090_low_3 |
 | |
|
| [»] scaffold0006 (4 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold1514 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 20365962 - 20366338
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20365962 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccgggaacttattctgctttgg |
20366061 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20366062 |
aattgagttacaactcattggagagtgatgatatgagggatctcttcttgctttttgcattaatgctaggtgatgatatagagtactttctcaaagttgc |
20366161 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20366162 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
20366261 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaa |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20366262 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcacgtagggacaa |
20366338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 13503489 - 13503877
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
13503489 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggattcgggaacttattctgctttgg |
13503588 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggt------aatgatatagagtactttctcaa |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
13503589 |
aattgagttacaactcattagagagtgatgaaatgaaggatctcttcttgctttttgcattactgctaggtgatgataatgatatagagtactttctcaa |
13503688 |
T |
|
| Q |
206 |
agttgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtctt |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503689 |
agttgcaatggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtctt |
13503788 |
T |
|
| Q |
306 |
ttgcttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503789 |
ttgcttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
13503877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 13608069 - 13608448
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
13608069 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggattcgggaacttattctgctttgg |
13608168 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
13608169 |
aattgagttacaactcattagagagtgatgaaatgagggctctcttcttgctttttgcattactggcaggt---gatatagagtactttctcaaagttgc |
13608265 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608266 |
aatggggttggacatattgaagcatgttaatgccatagatgatgcaagaaatagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
13608365 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608366 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
13608448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 13682171 - 13682547
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13682171 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccgggaacttattctgctttgg |
13682270 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| | | | ||||||||||||||||||||||| |
|
|
| T |
13682271 |
aattgagttacaactcattggagagtgatgatatgagggctctcttcttgctttttgcattattcctagatgaacaaatagagtactttctcaaagttgc |
13682370 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13682371 |
aatggggttggacatattgaagcatcttaatgccatagatgatgcaagaaacagactttacagaataatcaaatctttggaggcggcttgtcttttgctt |
13682470 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaa |
388 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13682471 |
gaagttaaaacagttggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcacgtagggacaa |
13682547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13581804 - 13582182
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
13581804 |
atgataaataagagggatgttgaatcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggagcctggaacttattctgctttgg |
13581903 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13581904 |
aattgagttacaactcattggagagtgatgaaatgagggatctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
13582003 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
13582004 |
aatggggttggacatattgaagcatgttaaagccatggatgatgcaagaaacagactttactcaataataaaatctttggaggcgagatgtcttttgctt |
13582103 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| |
|
|
| T |
13582104 |
gaagttaaaacagacagaaatatccaaatgcatgactttgtttgtgattttgctatctccataacacgtagggataaac |
13582182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 20475034 - 20475412
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20475034 |
atgaaaaataagagggatgtccaatattggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccgggaacttattctgctttgg |
20475133 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
20475134 |
aattgagttacaactcattggagagtgatgaaatgagggatctcttcttgctttttgcattaatgctaggtgagtctatagagtactatctcaaagttgc |
20475233 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
20475234 |
aatggggttggacttattgaagcatattaatgccatggatgatgcaagaaacagactttacacaataatcaaatctttggaagcgacttgtcttttgctt |
20475333 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20475334 |
gaagttaaaacaggtggaaatattcaaatgcatgactttgttcgtgattttgccatctccatagcatgtagggacaaac |
20475412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13668072 - 13668450
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
13668072 |
atgaaaaataagagggatgttgaatcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggagcctggaacttattctgctttgg |
13668171 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | | |||||||||||||||||||||| |
|
|
| T |
13668172 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattactgttacgtgaaaacgtagagtactttctcaaagttgc |
13668271 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13668272 |
aatagggttggacatattgaagcatgttaatgccatagattatgcaagaaacagactttactcaataatcaaatctttggaggcgagatgtcttttgctt |
13668371 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
13668372 |
gaagttaaaacagacagaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcacgtagggataaac |
13668450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 19141486 - 19141113
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
19141486 |
atgaaaaataagagggatgtccaatattggaaagatgcattaagaaaattacaaagtaatgatcatacagagttggacccgggaacttattctgctttgg |
19141387 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
19141386 |
aactcagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattactggcaggt---gatatagagtactttctcaaagttgc |
19141290 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19141289 |
aatggggttggacatattgaagcatattaatgccatggatgatgcaagaaacagactttacacaataatcaaatctttggaagcgacttgtcttttgctt |
19141190 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaa |
388 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19141189 |
gaagttaaaacaggtggaaagattcaaatgcatgactttgttcgtgattttgctatctccatagcacgtagggacaa |
19141113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13647545 - 13647923
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
13647545 |
atgaaaaataagagggatgtccaatcttggaaagacgcactaaggaaattacaaagtactgatcatacagagatggatgcgataacttattctgctttgg |
13647644 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13647645 |
aattgagttacaactctttggagagtgatgaaatgaaagatctcttcttgctttttgcattactgctaggtaatgatatagagtactttctcaaagttgc |
13647744 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13647745 |
aatgggattggacatattgaagcatattaatgccattgatgatgcaagaaacagactttacacaataatcaaatctttgaaggcgacttgtcttttgctt |
13647844 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
13647845 |
gaagttaaaacaggtggaaggattcaaatgcatgactttgttcgtgattttgctatctccatagcacgcagggacaaac |
13647923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 15901834 - 15901459
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacaga---gatggacccaggaacttattctgctt |
108 |
Q |
| |
|
||||||||||| |||||| | | |||||||||| ||||||| || ||||||||||||||||||||||||| |||||| | | |||||||||||||| |
|
|
| T |
15901834 |
atgaaaaataaaagggatatccggtcttggaaaaatgcattcagacaattacaaagtaatgatcatacagatcagatggattccgaaacttattctgctt |
15901735 |
T |
|
| Q |
109 |
tggaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagt |
208 |
Q |
| |
|
||||||| || |||| ||||||| | |||||||||||||||||||||||||| |||||||||| | ||| |||||||||||| || ||||||||| |||| |
|
|
| T |
15901734 |
tggaattaagctacagctcattgcaaagtgatgaaatgagggctctcttcttactttttgcatcactgccaggtaatgatatcgaatactttctccaagt |
15901635 |
T |
|
| Q |
209 |
tgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttg |
308 |
Q |
| |
|
||||| ||| || ||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
15901634 |
tgcaatgggattagacatattgaagcata------cagtggatgatgcaagaaacaaactttacacaataatcaaatctttggaggcgacttgtcttctg |
15901541 |
T |
|
| Q |
309 |
cttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15901540 |
cttgaagttaaaacagatgcaaagatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
15901459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 16471040 - 16470680
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||| || |||||| | |||| |||||||||||| |
|
|
| T |
16471040 |
atgaaaaataagtgggatgtccaatcatggaaagatgcattaaggaaattacaaagtaatgatcatactgaaatggacaaattaactaattctgctttgg |
16470941 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||| ||| | || || |||||||| |||| |||||||| |
|
|
| T |
16470940 |
aattgagttacaacgcattggagagtaatgaaacgagggatctcttcttgctttttgcattactgccaatcaaagagatagagtatgttctgaaagttgc |
16470841 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
| || |||||||| || |||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16470840 |
agtaggtttggacattttaaagcatattaataccatggatgatgcaagaaacaaactttacacaataatcaaatctttggaggcgacttgtcttttgctt |
16470741 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctcca |
372 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
16470740 |
gaagttaaaacaagtagatgtatccaaatgcatgattttgttcgtaatttttgtatctcca |
16470680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 13540723 - 13541098
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacaga---gatggacccaggaacttattctgctt |
108 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| ||||||| || ||||||||||| ||||| ||||| | |||||| ||| |||||||||||||| |
|
|
| T |
13540723 |
atgaaaaataaaagggatatccagtcttggaaaaatgcattcagacaattacaaagttatgatgatacatatcagatggatgcagaaacttattctgctt |
13540822 |
T |
|
| Q |
109 |
tggaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagt |
208 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||| |||||| | |||||||||||| |||| |
|
|
| T |
13540823 |
tggaattaagttacaattcattgcagagtgatgaaatgagggctctcttcttactttttgcatcactgtcaggcaatgatgtggagtactttctccaagt |
13540922 |
T |
|
| Q |
209 |
tgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttg |
308 |
Q |
| |
|
||||| |||||| ||||||||||||| || || | ||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13540923 |
tgcaatggggttagacatattgaagc------ataccgtggatgacgcaagaaacaaactagtcacaataatcaaatctttggaggcgacttgtcttttg |
13541016 |
T |
|
| Q |
309 |
cttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13541017 |
catgaagttaaaacagatgcaaagatccatatgcatgactttgttcgtgattttgctatctccgtagcacgtagggacaaac |
13541098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 136729 - 137108
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
136729 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggattcgggaacttattctgctttgg |
136828 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
136829 |
aattgagttacaactcattagagagtgatgaaatgagggctctcttcttgctttttgcattactggcaggt---gatatagagtactttctcaaagttgc |
136925 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136926 |
aatggggttggacatattgaagcatgttaatgccatagatgatgcaagaaatagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
137025 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
137026 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
137108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 165686 - 166064
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
165686 |
atgaaaaataagagggatgttgaatcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggagcctggaacttattctgctttgg |
165785 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || | | |||||||||||||||||||||| |
|
|
| T |
165786 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattactgttacgtgaaaacgtagagtactttctcaaagttgc |
165885 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
165886 |
aatagggttggacatattgaagcatgttaatgccatagattatgcaagaaacagactttactcaataatcaaatctttggaggcgagatgtcttttgctt |
165985 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
165986 |
gaagttaaaacagacagaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcacgtagggataaac |
166064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 95 - 390
Target Start/End: Original strand, 52412 - 52707
Alignment:
| Q |
95 |
aacttattctgctttggaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagag |
194 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | ||| | | |||||||||| || | |
|
|
| T |
52412 |
aacttattctgctttagaattgagttatgactcattggatagtgatgaaatgagggaccttttcttgcttttttctttacttccaggtaatgatgtattg |
52511 |
T |
|
| Q |
195 |
tactttctcaaagttgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggagg |
294 |
Q |
| |
|
|||||||| |||||||||| ||| | |||||||| || ||||||||| || | |||||||||||||| |||||||||||||| ||| |||| ||||||| |
|
|
| T |
52512 |
tactttctgaaagttgcaatgggtctagacatattaaaacatgttaataccgttgatgatgcaagaaatagactttacacaatgatcgaatcattggagg |
52611 |
T |
|
| Q |
295 |
cggcttgtcttttgcttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
52612 |
catcttgtcttttgcttgaagttaaagtagatggaaagatccaaatgcatgactttgtttgtgagtttgctatctccatagcatgcagggacaaac |
52707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 223322 - 223382
Alignment:
| Q |
12 |
atgaaaaataaga-gggatgttcagtcttggaaagatgcattaaggaaattacaaagtaat |
71 |
Q |
| |
|
||||| ||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
223322 |
atgaagaataagacgggatgttcaatctttgaaagatgcattaagaaaattacaaagtaat |
223382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 23968 - 24350
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23968 |
atgaaaaataagagggatgtccaatattggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccgggaacttattctgctttgg |
24067 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| | | | ||||||||||||||||||||||| |
|
|
| T |
24068 |
aattgagttacaactcattggagagtgatgatatgagggctctcttcttgctttttgcattattcctagatgaacaaatagagtactttctcaaagttgc |
24167 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24168 |
aatggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
24267 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaacttgt |
394 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24268 |
gaagttaaaacagacggaaagatccaaatgcatgactttgttcgtgattttgctatttccatagcatgtagggacaaacttgt |
24350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 38060334 - 38059956
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38060334 |
atgaaatataagaaggatgttcaatcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggactctggaacttattctgctttgg |
38060235 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | |||||||||||||| |||||||| |
|
|
| T |
38060234 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaccgataggtgaaaacatagagtactttctgaaagttgc |
38060135 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38060134 |
aatggggttggacatattgaagcatattaatgtcatggatgatgcaagaaacagactttacacaataatcaaatctttggaggcaagatgtcttttgctt |
38060035 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
38060034 |
gaagttaaaacagacggaaatatccaaatgcacgactttgttcgtgattttgctatctccgtagcacgtagggacaaac |
38059956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 22286742 - 22286364
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22286742 |
atgaaaaataagagggatgtccaatcttggaaagacgcactaaggaaattacaaagtactgatcatacagagatggattcgataacttattctgctttgg |
22286643 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22286642 |
aattgagttacaactctttggagagtgatgaaatgaaagatctcttcttgctttttgcattactgctaggtaatgatatagagtactttctcaaagttgc |
22286543 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22286542 |
aatgggtttggacatattgaagcatattaatgccattgatgatgcaagaaacagactttacacaataatcaaatctttgaaggcgacttgtcttttgctt |
22286443 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
22286442 |
gaagttaaaacaggtggaaggattcaaatgcatgactttgttcgtgattttgctatctccatagcacgcagggacaaac |
22286364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 21811775 - 21812143
Alignment:
| Q |
16 |
aaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttggaatt |
115 |
Q |
| |
|
||||||||||||| ||||| | ||||||| |||| ||||||||| |||||||||||||||||| |||||| | || ||||||||||||||| ||||| |
|
|
| T |
21811775 |
aaaataagagggacgttcaatattggaaatatgcgttaaggaaactacaaagtaatgatcatagcgagatgaatgcaaaaacttattctgcttttgaatt |
21811874 |
T |
|
| Q |
116 |
gagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgcaaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| || || || | ||||||||| ||| | |||||||| | |
|
|
| T |
21811875 |
gagttacaactcattggagagtgatgaaataagggatctcttcttgctttttgcattactgccagatactgttgtagagtactctctgagagttgcaatg |
21811974 |
T |
|
| Q |
216 |
gggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgcttgaag |
315 |
Q |
| |
|
|| ||||||||||| || | || |||| ||||||||||||| || |||||| | | ||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
21811975 |
ggtttggacatattaaa------tcataccattgatgatgcaagaatcatactttatagagtaatcgaatctttggaggcaacttgtcttttgcttggtg |
21812068 |
T |
|
| Q |
316 |
ttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
21812069 |
ttaaaaaaaggggaaagatccaaatgcatgacttggttcgagatttcgctatcttcatagcatgtagggacaaac |
21812143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 10797 - 10419
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
10797 |
atgaaaaataagagagatgtttagtcttggaaagatgcattaacgaaattacaaagtaatgatgatacagagatggaccgggcaactaattttgctttgg |
10698 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||| ||||||||| |||||||||||| || ||||| | ||||||||||||||||||||||||| |
|
|
| T |
10697 |
aattgagttactacttcttagagagtgatgaaatgagggatctcttctttctttttgcattactgttaggtcaaaatatagagtactttctcaaagttgc |
10598 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgctt |
311 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10597 |
aatggggttggacatattgaagcatattaatgcaatggacgatgcaagaaacagactttacacaataatcaaatctttggaggcgaaatgtcttttgctt |
10498 |
T |
|
| Q |
312 |
gaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10497 |
gaagttaaaacagacggaaatatccaaatgcatgacattgttcgtgattttgctatcttagtagcacgtagggacaaac |
10419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1514 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold1514
Description:
Target: scaffold1514; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 336 - 586
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacagagatggacccaggaacttattctgctttgg |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
336 |
atgaaaaataagagggatgttcaactttggaaagatgcattaagaaaattacaaagtaatgatcatatagagatggacccgggaacttattctgctttgg |
435 |
T |
|
| Q |
112 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| | |
|
|
| T |
436 |
aattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctatgtgagtctatagagtactttctcaaagtttc |
535 |
T |
|
| Q |
212 |
aaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaa |
262 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
536 |
aatggggttggacatattgaagcatattaatgtcatagataatgcaagaaa |
586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1514; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 606 - 756
Alignment:
| Q |
240 |
aatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgcttgaagttaaaacagacggaaatatccaaa |
339 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
606 |
aatgtcatcgatgatgcaagaaacagactttatacaataatcaaatctttggaggcgagatgtcttttgcttgaagttaaaacagatggaattatccaaa |
705 |
T |
|
| Q |
340 |
tgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
706 |
tgcatgactttgttcgtgattttgctatctccgtagcacgtagggataaac |
756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 43737 - 43362
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatgatcatacaga---gatggacccaggaacttattctgctt |
108 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| ||||||| || ||||||||||| ||||| ||||||| |||||| ||| |||||||||||||| |
|
|
| T |
43737 |
atgaaaaataaaagggatatccagtcttggaaaaatgcattcagacaattacaaagttatgatgatacagatcagatggatgcagaaacttattctgctt |
43638 |
T |
|
| Q |
109 |
tggaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagt |
208 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | || ||| |||||| | |||||||||||| |||| |
|
|
| T |
43637 |
tggaattaagttacaactcattgcagagtgatgaaatgagggctctcttcttactttttgcatcactgtcaggcaatgatgtggagtactttctccaagt |
43538 |
T |
|
| Q |
209 |
tgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttg |
308 |
Q |
| |
|
||||| |||||| ||||||||||||| || || | ||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43537 |
tgcaatggggttagacatattgaagc------ataccgtggatgacgcaagaaacaaactagtcacaataatcaaatctttggaggcgacttgtcttttg |
43444 |
T |
|
| Q |
309 |
cttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43443 |
catgaagttaaaacagatgcaaagatccatatgcatgactttgttcgtgattttgctatctccgtagcacgtagggacaaac |
43362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 113289 - 113661
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatga-tcatacagagatggacccaggaacttattctgctttg |
110 |
Q |
| |
|
|||||||||||||||||||| | || |||||| ||||||||| ||||||||||||| |||| |||| ||||| | |||||||||||||||| |
|
|
| T |
113289 |
atgaaaaataagagggatgtaaaatcatggaaaaatgcattaaagaaattacaaagtcatgactcatt---agatg----cgttaacttattctgctttg |
113381 |
T |
|
| Q |
111 |
gaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagagtactttctcaaagttg |
210 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||| ||||||| |
|
|
| T |
113382 |
gaattgagctatgactcattggatagtgatgaaatgagggacctcttcttgcttttttcattacttccaggtaatgatgtatcgtactttctgaaagttg |
113481 |
T |
|
| Q |
211 |
caaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggaggcggcttgtcttttgct |
310 |
Q |
| |
|
||| ||| |||||||||| || ||||||||| | |||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
113482 |
caatgggtctggacatattaaaacatgttaatattgttgatgatgcaagaaatagactttacacaatgatcgaatctttggaggcatcttgtcttttgct |
113581 |
T |
|
| Q |
311 |
tgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
113582 |
tgaagttaaagtagatggaaagatccaaatgcatgactttgtttgtgagtttgctatctccatagcatgcagggacaaac |
113661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 95 - 390
Target Start/End: Complemental strand, 20817277 - 20816982
Alignment:
| Q |
95 |
aacttattctgctttggaattgagttacaactcattggagagtgatgaaatgagggctctcttcttgctttttgcattaatgctaggtaatgatatagag |
194 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| |||||||||||||||| || |||||||||||| | ||| | | ||||||| || || | |
|
|
| T |
20817277 |
aacttattctgctttggaattgagctatgactcattggatagtgatgaaatgagggaccttttcttgcttttttctttacttccaggtaattatgtatcg |
20817178 |
T |
|
| Q |
195 |
tactttctcaaagttgcaaaggggttggacatattgaagcatgttaatgccatagatgatgcaagaaacagactttacacaataatcaaatctttggagg |
294 |
Q |
| |
|
|||||||| ||| |||||| ||| | |||||||| || ||||||||| || | |||||||||||||| | |||||||||||| ||| |||||||||||| |
|
|
| T |
20817177 |
tactttctaaaaattgcaatgggtctagacatattaaaacatgttaatacctttgatgatgcaagaaataaactttacacaatgatcgaatctttggagg |
20817078 |
T |
|
| Q |
295 |
cggcttgtcttttgcttgaagttaaaacagacggaaatatccaaatgcatgactttgttcgtgattttgctatctccatagcatgtagggacaaac |
390 |
Q |
| |
|
| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
20817077 |
caacttgtcttttgcttgaagttaaagtagatggaaagatccaaatgcatgactttgtttgtgagtttgctatctccatagcatgcagggacaaac |
20816982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20817354 - 20817293
Alignment:
| Q |
12 |
atgaaaaataagagggatgttcagtcttggaaagatgcattaaggaaattacaaagtaatga |
73 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||| |||||| |||||| |||| |
|
|
| T |
20817354 |
atgaaaaataagagggatgttcattcatggaaatatgcattaaagaaattgcaaagtcatga |
20817293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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