View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16090_low_6 (Length: 230)

Name: NF16090_low_6
Description: NF16090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16090_low_6
NF16090_low_6
[»] chr7 (2 HSPs)
chr7 (118-213)||(36718377-36718472)
chr7 (29-69)||(36718289-36718328)
[»] chr2 (1 HSPs)
chr2 (162-213)||(35414153-35414204)
[»] chr5 (1 HSPs)
chr5 (120-170)||(27178640-27178690)
[»] chr1 (1 HSPs)
chr1 (155-213)||(49250624-49250682)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 36718377 - 36718472
Alignment:
Q  118 tcatatcccacatttattattagcctataacaaggggattacaaaattacaacatcaacctaagtctctcttactttctctaactttgtcctacct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36718377 tcatatcccacatttattattagcctataacaaggggattacaaaattacaacatcaacgtaagtctctcttactttctctaactttgtcctacct 36718472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 36718289 - 36718328
Alignment:
Q  29 tcaaccaatgaaatccattcaattagacgcattcatcacct 69  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  36718289 tcaaccaataaaatccattcaattagacgca-tcatcacct 36718328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 35414204 - 35414153
Alignment:
Q  162 aattacaacatcaacctaagtctctcttactttctctaactttgtcctacct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35414204 aattacaacatcaacctaagtctctcttactttctctaactttatcctacct 35414153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 27178640 - 27178690
Alignment:
Q  120 atatcccacatttattattagcctataacaaggggattacaaaattacaac 170  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  27178640 atatcccacatttattattagcctaaaactaggggattacaaaattacaac 27178690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 49250682 - 49250624
Alignment:
Q  155 attacaaaattacaacatcaacctaagtctctcttactttctctaactttgtcctacct 213  Q
    ||||||||||||||||| ||||||||||||||||  || || ||||| || ||||||||    
T  49250682 attacaaaattacaacaacaacctaagtctctctcgctgtccctaaccttctcctacct 49250624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University