View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_10 (Length: 620)
Name: NF16091_high_10
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Complemental strand, 33806609 - 33806020
Alignment:
| Q |
18 |
cacctttggtggtaaggtgtatcaggttatttctattagtccacaattgaaagcccttcattgcagttctagaaggtcaataataccccttgtgctcata |
117 |
Q |
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| T |
33806609 |
cacctttggtgggaaggtgtatcaggttatttctattagtccacaattgaaagtccttcattgcagttctggaaggtcaataatgccccttgtgcttata |
33806510 |
T |
|
| Q |
118 |
agctcctaagatggagttgaaatctcccataaagcaccagggaatggggtggttcgtttgtaaagattgcagggactgccacagttctcttctcttcaaa |
217 |
Q |
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| T |
33806509 |
agctcctaagatggagttgaaatctcccataaagcaccagggaatggggtagttcgtttgtaaagattgcagggactgccacagttctcttctcttcaaa |
33806410 |
T |
|
| Q |
218 |
tagcatgttgaggcatatacatcagaaattccccaggtaatattgttatagtcaatagtaaaggaaactagttggtcagtaatctctaaaatcttagggt |
317 |
Q |
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| T |
33806409 |
taacatgttgaggcatatacatcagaaattccacaggtaatattgttatagtcaatagtaaaggaaactagttggtcagtaatctctaaaatcttagggt |
33806310 |
T |
|
| Q |
318 |
taaggtttgaagtacacatgcaccaaagattaggcttcaaattgtttctaatattagaaccgaaaagtttgccaccaagtctactaaaccaaactctcgg |
417 |
Q |
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| T |
33806309 |
taaggtttgaagtacacaggcaccaaagattaggcttcaaattttttctaatattagaaccgaaaagtttgtcaccatgtctactaaaccaaactctagg |
33806210 |
T |
|
| Q |
418 |
aagagaatcatgctccaaccatggttcactaataaaacaaattttggtttattaacatcaagaaacctcttaagagctaatctagtggaggcgttagcta |
517 |
Q |
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| T |
33806209 |
aagagaatcatgctccaaccatggttcactaataaaacaaaatttggtttattaacatcaagaaacctcttaagagctaatctagtgggggcgttagcta |
33806110 |
T |
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| Q |
518 |
aaccccttacattctagaaaaaactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgttgtttgctgatct |
607 |
Q |
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| T |
33806109 |
aaccccttacattccagaaaaaactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgttgtttgctgatct |
33806020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 11411153 - 11411201
Alignment:
| Q |
108 |
tgtgctcataagctcctaagatggagttgaaatctcccataaagcacca |
156 |
Q |
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| T |
11411153 |
tgtgctcatgagctcctagaatagagttgaaatctcccataaaacacca |
11411201 |
T |
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