View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_103 (Length: 280)
Name: NF16091_high_103
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_103 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 47264482 - 47264731
Alignment:
| Q |
17 |
cacagacttcaggtttacgtacacaagtcatttttattaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacag |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47264482 |
cacagacttcaggtttacgtacacaagtcattt--attaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacag |
47264579 |
T |
|
| Q |
117 |
tgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaagaaggcttacgtttcaa |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47264580 |
tgcggaggagccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgaccaagaaggcttacgtttcaa |
47264679 |
T |
|
| Q |
217 |
tattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaagat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47264680 |
tattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaagat |
47264731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 47275115 - 47275298
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47275115 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47275214 |
T |
|
| Q |
184 |
tgacatagatgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaaga |
267 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||||||| ||||||| ||| ||||| |
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| T |
47275215 |
tgacatagatgatcaagaatgcttgcgtttcaatatgcctatcatatttatctatcgtcatgaaccatcaatgatagagaaaga |
47275298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 47301234 - 47301062
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| || |
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| T |
47301234 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatc |
47301135 |
T |
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| Q |
184 |
tgacatagatgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatg |
256 |
Q |
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| T |
47301134 |
tgacatagatgatcaagaaggtttgcgcttcaatattcctatgatctttatctatcatcacgaaccatcaatg |
47301062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 47281862 - 47282025
Alignment:
| Q |
93 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
192 |
Q |
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||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47281862 |
cttcatcaccattattgttgacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacataga |
47281961 |
T |
|
| Q |
193 |
tgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatg |
256 |
Q |
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|||||||||| | || ||||||||||| ||||| || |||||||||||||| ||||| |||||| |
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| T |
47281962 |
tgatcaagaatgtttgcgtttcaatatgcctatcatatttatctatcgtcacgaaccatcaatg |
47282025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 47240681 - 47240814
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
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|||||||||||||| || | ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47240681 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47240780 |
T |
|
| Q |
184 |
tgacatagatgatcaagaaggcttacgtttcaat |
217 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |
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| T |
47240781 |
tgacatagatgatcaagaaggtttgcgattcaat |
47240814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 47296642 - 47296486
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
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|
|||||||||||||| || | ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
47296642 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgtgaagttaaactattatc |
47296543 |
T |
|
| Q |
184 |
tgacatagatgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcg |
240 |
Q |
| |
|
||||||||||||||||||||| | || ||||||| |||| | || ||||||||||| |
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|
| T |
47296542 |
tgacatagatgatcaagaaggtatgcgattcaatagtcctgtcatatttatctatcg |
47296486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 267
Target Start/End: Original strand, 47255512 - 47255686
Alignment:
| Q |
93 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||| ||||||||||| | |||||||| || |
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| T |
47255512 |
cttcatcaccattattgttcacagtgcggaggtcccaaccagagttggtacttccagctgcacccactcctcatgaagttaaactcctctctgacattga |
47255611 |
T |
|
| Q |
193 |
tgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatgaaagaaaaaga |
267 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| | || ||| ||| |||||||||||| ||||||||||| ||||| |
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|
| T |
47255612 |
tgatcaagaaggccttcgtttcaatcttcctgtcatatttgtctttcgtcatgaaccttcaatgaaagagaaaga |
47255686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 84 - 256
Target Start/End: Original strand, 32729216 - 32729388
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32729216 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagttgcacccactcctcgcgaagttaaactattatc |
32729315 |
T |
|
| Q |
184 |
tgacatagatgatcaagaaggcttacgtttcaatattcctatgatgtttatctatcgtcatgaaccgtcaatg |
256 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||| ||||| | || ||||||||||||| ||||| |||||| |
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|
| T |
32729316 |
tgatatagatgatcaagaaggtttgcgtttcaatgttcctgtcatatttatctatcgtcgcgaaccatcaatg |
32729388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 20511577 - 20511718
Alignment:
| Q |
108 |
tgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaagaaggctt |
207 |
Q |
| |
|
||||||| ||||| ||| |||||||| | |||| || |||||||||||||||||||| ||| ||||| || | |||||||||||||||||| || | | |
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| T |
20511577 |
tgttcactgtgcgaaggtgccaaccacagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaaaaaagtct |
20511676 |
T |
|
| Q |
208 |
acgtttcaatattcctatgatgtttatctatcgtcatgaacc |
249 |
Q |
| |
|
|||| |||||||| | | || |||||||||| ||||||||| |
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|
| T |
20511677 |
ccgttgcaatattcttctcatctttatctatcatcatgaacc |
20511718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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