View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_108 (Length: 269)

Name: NF16091_high_108
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_108
NF16091_high_108
[»] chr7 (12 HSPs)
chr7 (19-263)||(20115532-20115777)
chr7 (59-144)||(20096820-20096905)
chr7 (158-216)||(38374188-38374246)
chr7 (19-93)||(20084443-20084519)
chr7 (69-140)||(31388134-31388205)
chr7 (69-111)||(23226340-23226382)
chr7 (69-111)||(23235493-23235535)
chr7 (155-196)||(37307891-37307932)
chr7 (162-194)||(8901381-8901413)
chr7 (153-197)||(25602918-25602962)
chr7 (155-191)||(35836022-35836058)
chr7 (159-211)||(44651612-44651664)
[»] chr5 (16 HSPs)
chr5 (69-140)||(1406241-1406312)
chr5 (69-138)||(38497326-38497395)
chr5 (158-223)||(40715939-40716004)
chr5 (162-223)||(41630102-41630163)
chr5 (69-141)||(31850002-31850074)
chr5 (69-106)||(13279477-13279514)
chr5 (149-194)||(18147715-18147760)
chr5 (158-198)||(6489013-6489053)
chr5 (155-199)||(14985834-14985878)
chr5 (158-198)||(15889417-15889457)
chr5 (155-195)||(17861982-17862022)
chr5 (158-198)||(19759935-19759975)
chr5 (69-141)||(32050600-32050672)
chr5 (158-198)||(32200462-32200502)
chr5 (166-214)||(38784071-38784119)
chr5 (158-198)||(42473900-42473940)
[»] chr3 (20 HSPs)
chr3 (150-223)||(2662090-2662163)
chr3 (85-138)||(45851801-45851854)
chr3 (155-223)||(3755342-3755410)
chr3 (99-138)||(12139949-12139988)
chr3 (155-198)||(12976617-12976660)
chr3 (69-140)||(16067900-16067971)
chr3 (155-198)||(42401435-42401478)
chr3 (155-198)||(46226092-46226135)
chr3 (69-139)||(35333522-35333591)
chr3 (150-198)||(3079370-3079418)
chr3 (158-198)||(4216414-4216454)
chr3 (158-194)||(10308473-10308509)
chr3 (175-223)||(16792964-16793012)
chr3 (158-198)||(18870740-18870780)
chr3 (158-198)||(33745105-33745145)
chr3 (162-198)||(34962939-34962975)
chr3 (155-195)||(37921016-37921056)
chr3 (158-198)||(45096032-45096072)
chr3 (158-198)||(45431954-45431994)
chr3 (158-198)||(53162204-53162244)
[»] chr1 (12 HSPs)
chr1 (158-223)||(45139996-45140061)
chr1 (97-139)||(27532584-27532626)
chr1 (155-197)||(44641530-44641572)
chr1 (163-212)||(28219048-28219097)
chr1 (162-198)||(16033465-16033501)
chr1 (158-198)||(21400038-21400078)
chr1 (158-198)||(32075259-32075299)
chr1 (158-198)||(33020058-33020098)
chr1 (151-199)||(33175260-33175308)
chr1 (163-199)||(36467039-36467075)
chr1 (155-223)||(41974764-41974832)
chr1 (155-223)||(47070851-47070919)
[»] scaffold0361 (1 HSPs)
scaffold0361 (69-140)||(17154-17225)
[»] chr2 (31 HSPs)
chr2 (69-136)||(36449710-36449777)
chr2 (158-215)||(11560504-11560561)
chr2 (158-223)||(29544633-29544698)
chr2 (89-138)||(33206111-33206160)
chr2 (158-198)||(9519729-9519769)
chr2 (158-198)||(27244663-27244703)
chr2 (158-214)||(28202303-28202359)
chr2 (152-196)||(33424342-33424386)
chr2 (155-198)||(3197094-3197137)
chr2 (155-198)||(25186257-25186300)
chr2 (155-198)||(29734694-29734737)
chr2 (155-198)||(39761441-39761484)
chr2 (158-216)||(7206131-7206189)
chr2 (153-198)||(28202407-28202452)
chr2 (162-198)||(961113-961149)
chr2 (158-198)||(7302156-7302196)
chr2 (150-198)||(9547424-9547472)
chr2 (97-141)||(14743132-14743176)
chr2 (155-191)||(15625345-15625381)
chr2 (162-198)||(20239353-20239389)
chr2 (158-198)||(20455897-20455937)
chr2 (158-198)||(20565090-20565130)
chr2 (158-198)||(24592861-24592901)
chr2 (158-198)||(30045459-30045499)
chr2 (158-198)||(30050622-30050662)
chr2 (158-198)||(30141666-30141706)
chr2 (88-144)||(32875173-32875229)
chr2 (158-198)||(33063992-33064032)
chr2 (174-222)||(34977226-34977274)
chr2 (158-198)||(36474768-36474808)
chr2 (158-198)||(41526791-41526831)
[»] chr4 (23 HSPs)
chr4 (64-142)||(29429703-29429781)
chr4 (153-198)||(2649748-2649793)
chr4 (69-142)||(8138320-8138393)
chr4 (155-198)||(22040653-22040696)
chr4 (152-197)||(1332904-1332949)
chr4 (153-198)||(16304113-16304158)
chr4 (158-223)||(19588160-19588225)
chr4 (158-223)||(20799384-20799449)
chr4 (158-223)||(56551582-56551647)
chr4 (158-198)||(4485848-4485888)
chr4 (158-198)||(6789441-6789481)
chr4 (158-198)||(12439670-12439710)
chr4 (162-198)||(13276139-13276175)
chr4 (158-198)||(16584964-16585004)
chr4 (158-198)||(20403183-20403223)
chr4 (69-141)||(21037296-21037368)
chr4 (158-198)||(36203242-36203282)
chr4 (158-198)||(42756121-42756161)
chr4 (158-198)||(43702344-43702384)
chr4 (158-198)||(49952686-49952726)
chr4 (158-198)||(50362154-50362194)
chr4 (158-198)||(56497623-56497663)
chr4 (158-198)||(56564998-56565038)
[»] chr8 (17 HSPs)
chr8 (158-223)||(444419-444484)
chr8 (158-215)||(11708992-11709049)
chr8 (156-201)||(33763819-33763864)
chr8 (155-223)||(7553682-7553750)
chr8 (69-140)||(8438573-8438644)
chr8 (159-210)||(29908018-29908069)
chr8 (172-223)||(35198527-35198578)
chr8 (150-212)||(29652216-29652278)
chr8 (162-223)||(6833810-6833870)
chr8 (158-223)||(8881281-8881346)
chr8 (162-215)||(12938925-12938978)
chr8 (153-198)||(40919374-40919419)
chr8 (150-198)||(26991772-26991820)
chr8 (158-198)||(27718909-27718949)
chr8 (155-223)||(32555257-32555325)
chr8 (97-141)||(37265521-37265565)
chr8 (158-198)||(39821890-39821930)
[»] scaffold0334 (1 HSPs)
scaffold0334 (155-198)||(5185-5228)
[»] chr6 (7 HSPs)
chr6 (155-198)||(9923243-9923286)
chr6 (158-215)||(23629835-23629892)
chr6 (161-198)||(28231440-28231477)
chr6 (153-198)||(29680589-29680634)
chr6 (155-223)||(8569712-8569780)
chr6 (158-198)||(18256889-18256929)
chr6 (158-198)||(33824887-33824927)
[»] scaffold0038 (1 HSPs)
scaffold0038 (161-198)||(31937-31974)
[»] scaffold0010 (1 HSPs)
scaffold0010 (157-194)||(132267-132304)
[»] scaffold1379 (1 HSPs)
scaffold1379 (158-198)||(1642-1682)
[»] scaffold0067 (1 HSPs)
scaffold0067 (155-198)||(36257-36301)
[»] scaffold0016 (1 HSPs)
scaffold0016 (162-198)||(99047-99083)
[»] scaffold0007 (1 HSPs)
scaffold0007 (157-197)||(223645-223685)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 20115777 - 20115532
Alignment:
Q  19 gtttgaatgatt-cttttcatacgtttattttaatccatttataaattgattaaattacactccctttctctaagagaagcttgaattatactcatattt 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20115777 gtttgaatgatttcttttcatacgtttattttaatccatttataaattgattaaattacactccctttctctaagagaagcttgaattacactcatattt 20115678  T
Q  118 tctcttatgttgaaatatacacttctcagttttcataagtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggt 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  20115677 tctcttatgttgaaatatacacttctcagttttcatgagtttagctcagttggtagggacaatgcatattatatgtaaggtacaaggtttaaaccccggt 20115578  T
Q  218 caccacnnnnnnntttacacttccctccgttaaaaagtataattta 263  Q
    ||||||        |||||||||||| |||||||||||| ||||||    
T  20115577 caccacaaaaaaaattacacttcccttcgttaaaaagtaaaattta 20115532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 20096905 - 20096820
Alignment:
Q  59 ataaattgattaaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacacttctc 144  Q
    ||||||||| ||||||||||||| ||| ||||||||||| |||||||| |||||| ||||||||||| || ||||||||| |||||    
T  20096905 ataaattgagtaaattacactccatttttctaagagaagtttgaattacactcattttttctcttatattaaaatatacatttctc 20096820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 38374246 - 38374188
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccgg 216  Q
    |||||||||||| || ||||||||||||||||||||||||| ||  ||| |||||||||    
T  38374246 ttagctcaattggtatggacaatgcatagtatatgcaaggtccagggttcaaaccccgg 38374188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 20084519 - 20084443
Alignment:
Q  19 gtttgaatgattcttttc--atacgtttattttaatccatttataaattgattaaattacactccctttctctaaga 93  Q
    |||||||||||| ||||   ||||||||||||||| ||||| ||||||| | ||||||||||||| ||| |||||||    
T  20084519 gtttgaatgatttttttattatacgtttattttaaaccattaataaattaagtaaattacactccttttttctaaga 20084443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 31388205 - 31388134
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacact 140  Q
    |||||||||||| | ||| ||||||||||||||||||| | |  | |||||||||||||| |||| ||||||    
T  31388205 taaattacactctccttccctaagagaagcttgaattacattattcttttctcttatgttaaaatctacact 31388134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 23226340 - 23226382
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactc 111  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  23226340 taaattacactcattttctctaagagaagcttgaattacactc 23226382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 23235493 - 23235535
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactc 111  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  23235493 taaattacactcattttctctaagagaagcttgaattacactc 23235535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 37307932 - 37307891
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaag 196  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  37307932 agtttagctcagttgataggaacaatgcataatatatgcaag 37307891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 8901381 - 8901413
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgca 194  Q
    ||||||||||| |||||||||||||||||||||    
T  8901381 ctcaattgatatggacaatgcatagtatatgca 8901413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 25602918 - 25602962
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaagg 197  Q
    |||| ||||||||||||||| | |||||||||| |||||||||||    
T  25602918 taagcttagctcaattgataagaacaatgcataatatatgcaagg 25602962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 35836022 - 35836058
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatat 191  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  35836022 agtttagctcagttgatagagacaatgcatagtatat 35836058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 44651612 - 44651664
Alignment:
Q  159 tagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaac 211  Q
    ||||||||||||||  ||||||||||| |||||||||||| | ||||| ||||    
T  44651612 tagctcaattgataatgacaatgcataatatatgcaaggttcgaagttcaaac 44651664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 1406312 - 1406241
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacact 140  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  || | |||||||||| |||||||||||    
T  1406312 taaattacactccccttctctaagagaagcttgaattacactctcatctcctcttatgttaaaatatacact 1406241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 38497326 - 38497395
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatataca 138  Q
    |||||||||||||| | ||||||||||||||||||||| |||| | |   |||||||||| |||||||||    
T  38497326 taaattacactcccctcctctaagagaagcttgaattacactcttctcccctcttatgttaaaatataca 38497395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 40716004 - 40715939
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||||||||||| |||||||||||| |||||||||||| |   ||| ||||||||| ||||||    
T  40716004 ttagctcaattgatatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 40715939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 41630163 - 41630102
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||||||||||||||| |||||||||||| |    || ||||||||||||||||    
T  41630163 ctcaattgatagggacaatgcataatatatgcaaggttcgggattcaaaccccggtcaccac 41630102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 31850002 - 31850074
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacactt 141  Q
    |||||||||||||| |  ||||||||| |||||||||| ||||  ||  ||||||||||| ||||||||||||    
T  31850002 taaattacactcccctcgtctaagagatgcttgaattacactctcatcctctcttatgttaaaatatacactt 31850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 13279477 - 13279514
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaatta 106  Q
    |||||||||||||| | |||||||||||||||||||||    
T  13279477 taaattacactcccctcctctaagagaagcttgaatta 13279514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 18147715 - 18147760
Alignment:
Q  149 ttcataagtttagctcaattgatagggacaatgcatagtatatgca 194  Q
    ||||| ||||||||||| |||||| |||||||||||| ||||||||    
T  18147715 ttcatgagtttagctcagttgataaggacaatgcataatatatgca 18147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 6489013 - 6489053
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  6489013 ttagctcagttggtagggacaatgcataatatatgcaaggt 6489053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 14985834 - 14985878
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggta 199  Q
    |||||||||||||||  ||||||||| |||| |||||||||||||    
T  14985834 agtttagctcaattgtcagggacaatacataatatatgcaaggta 14985878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 15889417 - 15889457
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  15889417 ttagctcagttggtagggacaatgcataatatatgcaaggt 15889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 17861982 - 17862022
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaa 195  Q
    ||||||||||| ||| ||||||||||||||| |||||||||    
T  17861982 agtttagctcagttggtagggacaatgcataatatatgcaa 17862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 19759935 - 19759975
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| |||| |||||||||| ||||||||||||    
T  19759935 ttagctcaattggtaggtacaatgcataatatatgcaaggt 19759975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 32050600 - 32050672
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacactt 141  Q
    |||||||||||||| || ||| | ||| |||||||||| ||||  ||| ||||||||||| |||| |||||||    
T  32050600 taaattacactcccgttttctcaaagatgcttgaattacactctcattctctcttatgttaaaatgtacactt 32050672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 32200502 - 32200462
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||| |||||||||||||| ||||||||||||    
T  32200502 ttagctcagttgacagggacaatgcataatatatgcaaggt 32200462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 38784119 - 38784071
Alignment:
Q  166 attgatagggacaatgcatagtatatgcaaggtacaaagtttaaacccc 214  Q
    |||| ||||||||||||||| ||||||||| || ||||||| |||||||    
T  38784119 attggtagggacaatgcataatatatgcaaagtccaaagttcaaacccc 38784071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 42473900 - 42473940
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  42473900 ttagctcaattgattggaacaatgcataatatatgcaaggt 42473940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 2662090 - 2662163
Alignment:
Q  150 tcataagtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||||||| ||| ||  ||||||||||| |||||||||||| | |||||||||| |||| ||||||    
T  2662090 tcataagtttagctcagttggtaaagacaatgcataatatatgcaaggttcgaagtttaaactccggccaccac 2662163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 45851801 - 45851854
Alignment:
Q  85 tctctaagagaagcttgaattatactcatattttctcttatgttgaaatataca 138  Q
    |||||||||||||||||||||| | |||| |||||||||||||| |||| ||||    
T  45851801 tctctaagagaagcttgaattacattcatcttttctcttatgttaaaatctaca 45851854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 3755342 - 3755410
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||||||  ||| ||||||||||||||| |||||||||||| ||  ||||||||| ||| ||||||    
T  3755342 agtttagctcggttggtagggacaatgcataatatatgcaaggtccagggtttaaacctcggccaccac 3755410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 12139988 - 12139949
Alignment:
Q  99 ttgaattatactcatattttctcttatgttgaaatataca 138  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  12139988 ttgaattatactcatattttatcttatgttaaaatataca 12139949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 12976660 - 12976617
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||    
T  12976660 agtttaactcagttgatagggacaatgcataatatatgcaaggt 12976617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 16067971 - 16067900
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacact 140  Q
    ||||||||||||| |||| || | ||| |||||||||| ||||  ||| ||||||||||| |||||||||||    
T  16067971 taaattacactccttttccctcaaagatgcttgaattacactcccattctctcttatgttaaaatatacact 16067900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 42401435 - 42401478
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||    
T  42401435 agtttaactcagttggtagggacaatgcatagtatatgcaaggt 42401478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 46226135 - 46226092
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||    
T  46226135 agtttaactcaattggtagggacaatgcataatatatgcaaggt 46226092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 35333522 - 35333591
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacac 139  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||   | |||||||||||| ||||||||||    
T  35333522 taaattacactccctttca-taagagaagtttggattatactctcctcttctcttatgttaaaatatacac 35333591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 3079418 - 3079370
Alignment:
Q  150 tcataagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||| ||||||| |||||||||||||| ||||| ||||| ||||||    
T  3079418 tcataagcttagctctattgatagggacaacgcataatatatccaaggt 3079370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 4216454 - 4216414
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  4216454 ttagctcagttgataaggacaatgcataatatatgcaaggt 4216414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 10308473 - 10308509
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgca 194  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  10308473 ttagctcaattggtagggacaatgcataatatatgca 10308509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 16793012 - 16792964
Alignment:
Q  175 gacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||||||| |||||||||||| ||  ||| ||||||||||||||||    
T  16793012 gacaatgcataatatatgcaaggtccagggttcaaaccccggtcaccac 16792964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 18870780 - 18870740
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  18870780 ttagctcagttggtagggacaatgcataatatatgcaaggt 18870740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 33745105 - 33745145
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  33745105 ttagctcaattgatatggacaatgcataaaatatgcaaggt 33745145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 34962939 - 34962975
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  34962939 ctcaattgataaggacaatgcatactatatgcaaggt 34962975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 37921056 - 37921016
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaa 195  Q
    ||||||||||| |||||||||| |||||||| |||||||||    
T  37921056 agtttagctcagttgatagggataatgcataatatatgcaa 37921016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 45096032 - 45096072
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  45096032 ttagctcagttgataaggacaatgcataatatatgcaaggt 45096072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 45431954 - 45431994
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  45431954 ttagctcagttggtagggacaatgcataatatatgcaaggt 45431994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 53162204 - 53162244
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  53162204 ttagctcaattgatatggacaatgcataaaatatgcaaggt 53162244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 45140061 - 45139996
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||| ||| || |||||||||||| |||||||||||| || |||||||||||||| ||||||    
T  45140061 ttagctcagttggtatggacaatgcataatatatgcaaggtccagagtttaaaccccggccaccac 45139996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 27532626 - 27532584
Alignment:
Q  97 gcttgaattatactcatattttctcttatgttgaaatatacac 139  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  27532626 gcttgaattatactctcattttctcttatgttaaaatatacac 27532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 44641530 - 44641572
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaagg 197  Q
    ||||||||||| |||||| |||||||||||| |||||||||||    
T  44641530 agtttagctcagttgatatggacaatgcataatatatgcaagg 44641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 28219097 - 28219048
Alignment:
Q  163 tcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaacc 212  Q
    ||||||||||||||||||| ||| |||||| ||||| ||| |||||||||    
T  28219097 tcaattgatagggacaatgtataatatatgtaaggtccaaggtttaaacc 28219048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 16033501 - 16033465
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  16033501 ctcagttgatagggacaatgcataatatatgcaaggt 16033465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 21400078 - 21400038
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  21400078 ttagctcagttggtagggacaatgcataatatatgcaaggt 21400038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 32075299 - 32075259
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| ||||||| |||||||||||||||||    
T  32075299 ttagctcagttgataaggacaatacatagtatatgcaaggt 32075259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 33020098 - 33020058
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||| || ||||||||||||||| ||||||||||||    
T  33020098 ttagctcaactggtagggacaatgcataatatatgcaaggt 33020058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 33175260 - 33175308
Alignment:
Q  151 cataagtttagctcaattgatagggacaatgcatagtatatgcaaggta 199  Q
    |||||| |||||| |||||||| |||||||||||| |||||| ||||||    
T  33175260 cataagcttagcttaattgatatggacaatgcataatatatgtaaggta 33175308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 36467075 - 36467039
Alignment:
Q  163 tcaattgatagggacaatgcatagtatatgcaaggta 199  Q
    |||||||||| |||||||||||| |||||||||||||    
T  36467075 tcaattgatatggacaatgcataatatatgcaaggta 36467039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 41974764 - 41974832
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||| ||| |||||||||| |||||||| ||||||||||||   | ||| ||||||||| ||||||    
T  41974764 agtttagttcagttgatagggataatgcataatatatgcaaggtttgaggttcaaaccccggccaccac 41974832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 47070851 - 47070919
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||| ||| |||||||| ||||| |||| |||||||||||| |  |||||||||| |||| |||||    
T  47070851 agtttagttcagttgataggaacaatacataatatatgcaaggttcggagtttaaacctcggttaccac 47070919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 17225 - 17154
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacact 140  Q
    |||||||||||||| |  |||||||||||||||||||| ||||| ||   |||||||||| |||||||||||    
T  17225 taaattacactcccctcttctaagagaagcttgaattacactcacatcccctcttatgttaaaatatacact 17154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 36449710 - 36449777
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatata 136  Q
    |||||||||||| | ||||||||||||||||||||||| ||||   |||||| ||||||| |||||||    
T  36449710 taaattacactctccttctctaagagaagcttgaattacactccccttttcttttatgttaaaatata 36449777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 11560504 - 11560561
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccg 215  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||  ||| ||||||||    
T  11560504 ttagctcaattggtagggacaatgcataatatatgcaaggttcagggttcaaaccccg 11560561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 29544633 - 29544698
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||| ||||||||||||||| |||||||||||| |   ||| ||||||||| ||||||    
T  29544633 ttagctcaattggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 29544698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 33206111 - 33206160
Alignment:
Q  89 taagagaagcttgaattatactcatattttctcttatgttgaaatataca 138  Q
    |||||||||||||||||| |||||| | |||||||||||| |||||||||    
T  33206111 taagagaagcttgaattacactcatctcttctcttatgttaaaatataca 33206160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 9519769 - 9519729
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  9519769 ttagctcaattgatatggacaatgcataatatatgcaaggt 9519729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 27244663 - 27244703
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  27244663 ttagctcagttgatagggacaatgcataatatatgcaaggt 27244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 28202303 - 28202359
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaacccc 214  Q
    |||||||| ||||||||||||||||||| |||||| ||||| | ||||| |||||||    
T  28202303 ttagctcagttgatagggacaatgcataatatatgtaaggtccgaagttcaaacccc 28202359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 33424386 - 33424342
Alignment:
Q  152 ataagtttagctcaattgatagggacaatgcatagtatatgcaag 196  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||    
T  33424386 ataagcttagctcaattgatagggacagtgcataatatatgcaag 33424342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 3197137 - 3197094
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||    
T  3197137 agtttagctcagttggtagggacaatgcataatatatgcaaggt 3197094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 25186300 - 25186257
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  25186300 agtttagctcagttgatatggacaatgcataatatatgcaaggt 25186257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 29734694 - 29734737
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  29734694 agtttagctcagttgatatggacaatgcataatatatgcaaggt 29734737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 39761441 - 39761484
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  39761441 agtttagctcagttgataaggacaatgcataatatatgcaaggt 39761484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 7206131 - 7206189
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccgg 216  Q
    |||||||| ||| ||| ||||||||||| |||||||||||| | | |||||||||||||    
T  7206131 ttagctcagttggtagagacaatgcataatatatgcaaggtccgaggtttaaaccccgg 7206189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 28202407 - 28202452
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||||| || |||||||||||| |||||| |||||    
T  28202407 taagtttagctcaattggtatggacaatgcataatatatgtaaggt 28202452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 961113 - 961149
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  961113 ctcaattggtagggacaatgcataatatatgcaaggt 961149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 7302196 - 7302156
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||||||||||||||||  |||||||||||    
T  7302196 ttagctcagttgatagggacaatgcataaaatatgcaaggt 7302156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 9547472 - 9547424
Alignment:
Q  150 tcataagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||| ||| |||| |||||| |||||||||||| ||||||||||||    
T  9547472 tcataagcttaactcagttgatatggacaatgcataatatatgcaaggt 9547424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 14743176 - 14743132
Alignment:
Q  97 gcttgaattatactcatattttctcttatgttgaaatatacactt 141  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||    
T  14743176 gcttgaattatactcatcttccctcttatgttaaaatatacactt 14743132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 15625381 - 15625345
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatat 191  Q
    |||||||||||||||||||||||| |||||| |||||    
T  15625381 agtttagctcaattgatagggacattgcataatatat 15625345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 20239353 - 20239389
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  20239353 ctcaattgatagggataatgcataatatatgcaaggt 20239389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 20455897 - 20455937
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  20455897 ttagctcaattggtatggacaatgcataatatatgcaaggt 20455937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 20565130 - 20565090
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  20565130 ttagctcagttggtagggacaatgcataatatatgcaaggt 20565090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 24592901 - 24592861
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  24592901 ttagctcagttggtagggacaatgcataatatatgcaaggt 24592861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 30045459 - 30045499
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| ||||||||||||||| ||||| ||||||    
T  30045459 ttagctcaattggtagggacaatgcataatatatacaaggt 30045499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 30050622 - 30050662
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| ||||||||||||||| ||||| ||||||    
T  30050622 ttagctcaattggtagggacaatgcataatatatacaaggt 30050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 30141666 - 30141706
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| ||||||||||||||| ||||| ||||||    
T  30141666 ttagctcaattggtagggacaatgcataatatatacaaggt 30141706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 32875173 - 32875229
Alignment:
Q  88 ctaagagaagcttgaattatactcatattttctcttatgttgaaatatacacttctc 144  Q
    |||| ||| |||||||||| |||| | || ||||||||||| |||||||||||||||    
T  32875173 ctaaaagatgcttgaattacactcttcttctctcttatgttaaaatatacacttctc 32875229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 33063992 - 33064032
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  33063992 ttagctcagttgatatggacaatgcataatatatgcaaggt 33064032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 34977226 - 34977274
Alignment:
Q  174 ggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcacca 222  Q
    |||||||||||| |||||||||||| |  |||||||||||||| |||||    
T  34977226 ggacaatgcataatatatgcaaggtccggagtttaaaccccggccacca 34977274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 36474768 - 36474808
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||||||||||||||||  |||||||||||    
T  36474768 ttagctcagttgatagggacaatgcataaaatatgcaaggt 36474808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 41526831 - 41526791
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||| | |||||||||||||||||||||||||    
T  41526831 ttagctcagttgacatggacaatgcatagtatatgcaaggt 41526791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 29429781 - 29429703
Alignment:
Q  64 ttgattaaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacacttc 142  Q
    |||| |||||| ||||||| ||| |||||||| |||||||||| ||||   || ||||||||||| |||||||||||||    
T  29429781 ttgagtaaattgcactccccttccctaagagatgcttgaattacactctccttctctcttatgttaaaatatacacttc 29429703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 2649793 - 2649748
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  2649793 taagtttagctcagttggtagggacaatgcataatatatgcaaggt 2649748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 8138320 - 8138393
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacacttc 142  Q
    |||||||||||||| | | ||||||||||||||||||| || |   ||| |||||||||| |||||||||||||    
T  8138320 taaattacactcccctcccctaagagaagcttgaattacacacccctttcctcttatgttaaaatatacacttc 8138393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 22040653 - 22040696
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  22040653 agtttagctcagttgatatggacaatgcataatatatgcaaggt 22040696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 1332904 - 1332949
Alignment:
Q  152 ataagtttagctcaattgatagggacaatgcatagtatatgcaagg 197  Q
    ||||| |||||||||||| |||||||| |||||| |||||||||||    
T  1332904 ataagcttagctcaattggtagggacattgcataatatatgcaagg 1332949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 16304158 - 16304113
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||| ||| || |||||||||||| ||||||||||||    
T  16304158 taagtttagctcagttggtatggacaatgcataatatatgcaaggt 16304113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 19588160 - 19588225
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||| || ||||||||||||  ||||||||||| ||  ||| ||||||||| ||||||    
T  19588160 ttagctcaattggtatggacaatgcataaaatatgcaaggtccagggttcaaaccccggccaccac 19588225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 20799449 - 20799384
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||| ||| ||||||||||||||| |||||||||||| |   ||| |||||| |||||||||    
T  20799449 ttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccctggtcaccac 20799384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 56551647 - 56551582
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||| ||| || |||||||||||| |||||||||||| | | ||| ||||||||| ||||||    
T  56551647 ttagctcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccccggccaccac 56551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 4485888 - 4485848
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||| |||||||||| ||||||| |||||||||||||||||    
T  4485888 ttagttcaattgataaggacaatacatagtatatgcaaggt 4485848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 6789481 - 6789441
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| || |||||||||||||||||||||||||    
T  6789481 ttagctcagttggtaaggacaatgcatagtatatgcaaggt 6789441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 12439670 - 12439710
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  12439670 ttagctcagttgataaggacaatgcataatatatgcaaggt 12439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 13276139 - 13276175
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  13276139 ctcaattggtagggacaatgcataatatatgcaaggt 13276175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 16585004 - 16584964
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  16585004 ttagctcaattgatatggacaatgcataaaatatgcaaggt 16584964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 20403223 - 20403183
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  20403223 ttagctcagttgataggaacaatgcataatatatgcaaggt 20403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 21037296 - 21037368
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacactt 141  Q
    ||||||| |||||  |||| |||||||||||||||||| ||||   |  ||||||||||| ||||||||||||    
T  21037296 taaattatactcctcttctttaagagaagcttgaattacactcccctcctctcttatgttaaaatatacactt 21037368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 36203242 - 36203282
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  36203242 ttagctcagttgataaggacaatgcataatatatgcaaggt 36203282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 42756161 - 42756121
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  42756161 ttagctcagttgataaggacaatgcataatatatgcaaggt 42756121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 43702384 - 43702344
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||||||||||| |||| ||||||||||||    
T  43702384 ttagctcagttgatagggacaatacataatatatgcaaggt 43702344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 49952726 - 49952686
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||| |||||||||| |||||||||||| ||||||||||||    
T  49952726 ttagatcaattgataaggacaatgcataatatatgcaaggt 49952686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 50362194 - 50362154
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  50362194 ttagctcagttggtagggacaatgcataatatatgcaaggt 50362154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 56497663 - 56497623
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  56497663 ttagctcaattggtaaggacaatgcataatatatgcaaggt 56497623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 56565038 - 56564998
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  56565038 ttagctcaattgatatggacaatgcataaaatatgcaaggt 56564998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 444419 - 444484
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||| || |||||||||||| |||||||||||| |   ||||||||||||| ||||||    
T  444419 ttagctcaattggtaaggacaatgcataatatatgcaaggtccggggtttaaaccccggccaccac 444484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 11708992 - 11709049
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccg 215  Q
    |||||||| ||| ||||||||||||||| |||||||||||| | ||||| ||||||||    
T  11708992 ttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccg 11709049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 33763819 - 33763864
Alignment:
Q  156 gtttagctcaattgatagggacaatgcatagtatatgcaaggtaca 201  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  33763819 gtttcgctcaattgataaggacaatgcataatatatgcaaggtaca 33763864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 7553682 - 7553750
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||| ||| ||| |||| |||| ||||||    
T  7553682 agtttaactcagttggtagggacaatgcataatatatgcaaggtccaaggttcaaactccggacaccac 7553750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 8438644 - 8438573
Alignment:
Q  69 taaattacactccctttctctaagagaagcttgaattatactcatattttctcttatgttgaaatatacact 140  Q
    |||||||||| |||||  |||||||||| ||||||||| ||||   || ||||||||||| |||||||||||    
T  8438644 taaattacacccccttcttctaagagaaacttgaattacactccacttctctcttatgttaaaatatacact 8438573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 29908018 - 29908069
Alignment:
Q  159 tagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaa 210  Q
    ||||||| ||| ||||||||||||||| |||||||||||| || ||||||||    
T  29908018 tagctcagttggtagggacaatgcataatatatgcaaggtccagagtttaaa 29908069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 35198578 - 35198527
Alignment:
Q  172 agggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||||||||| |||||||||||| || ||||  |||||||||||||||    
T  35198578 agggacaatgcataatatatgcaaggttcagagttcgaaccccggtcaccac 35198527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 29652216 - 29652278
Alignment:
Q  150 tcataagtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaacc 212  Q
    |||| ||||||||||| |||||| | |||||||||| |||||||||||| || |||| |||||    
T  29652216 tcatgagtttagctcagttgataagaacaatgcataatatatgcaaggtccagagttcaaacc 29652278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 6833870 - 6833810
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||||| |||||||||| |||| |||||||||||| ||| ||| ||||||| ||||||||    
T  6833870 ctcaattggtagggacaat-cataatatatgcaaggtccaaggttcaaaccccagtcaccac 6833810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 8881281 - 8881346
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||| | ||| ||||||||||||||| |||||||||||| ||  ||| ||||||||| ||||||    
T  8881281 ttagctgacttggtagggacaatgcataatatatgcaaggtccagggttcaaaccccggccaccac 8881346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 12938978 - 12938925
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccg 215  Q
    ||||| |||||||||||||||||| ||||| |||||| | || |||||||||||    
T  12938978 ctcaactgatagggacaatgcataatatatacaaggttcgaaatttaaaccccg 12938925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 40919419 - 40919374
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  40919419 taagtttagctcagttggtaggaacaatgcataatatatgcaaggt 40919374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 26991820 - 26991772
Alignment:
Q  150 tcataagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||| ||||| ||||| |||||| |||||||||||| ||||||||||||    
T  26991820 tcatgagtttggctcagttgatatggacaatgcataatatatgcaaggt 26991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 27718949 - 27718909
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  27718949 ttagctcagttgatatggacaatgcataatatatgcaaggt 27718909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 32555257 - 32555325
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    ||||||||| | ||| || ||||||||||||  ||||||||||| ||| |||  |||||||||||||||    
T  32555257 agtttagcttagttggtatggacaatgcataaaatatgcaaggttcaaggttcgaaccccggtcaccac 32555325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 37265521 - 37265565
Alignment:
Q  97 gcttgaattatactcatattttctcttatgttgaaatatacactt 141  Q
    |||||||||| |||| |||||||||||||||| ||| ||||||||    
T  37265521 gcttgaattacactcttattttctcttatgttaaaacatacactt 37265565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 39821890 - 39821930
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  39821890 ttagctcagttggtagggacaatgcataatatatgcaaggt 39821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 5185 - 5228
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||||||| || |||||||||||| ||||||||||||    
T  5185 agtttagctcaattggtatggacaatgcataatatatgcaaggt 5228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 9923243 - 9923286
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||    
T  9923243 agtttagctcaattgataaggacaatgcataatatatacaaggt 9923286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 23629892 - 23629835
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccg 215  Q
    |||||||||||| ||  ||||||||||| |||||||||||||  ||||| ||||||||    
T  23629892 ttagctcaattggtaatgacaatgcataatatatgcaaggtatgaagttcaaaccccg 23629835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 28231477 - 28231440
Alignment:
Q  161 gctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  28231477 gctcagttgatagggacaatgcataatatatgcaaggt 28231440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 29680589 - 29680634
Alignment:
Q  153 taagtttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||||||||| | |||||||||| |||||||| ||||||||||||    
T  29680589 taagtttagcttatttgatagggataatgcataatatatgcaaggt 29680634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 8569712 - 8569780
Alignment:
Q  155 agtttagctcaattgatagggacaatgcatagtatatgcaaggtacaaagtttaaaccccggtcaccac 223  Q
    |||||| |||||||| || |||||||||||| |||||||||||| |   ||| ||||||||| ||||||    
T  8569712 agtttaactcaattggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccac 8569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 18256889 - 18256929
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  18256889 ttagctcagttgataaggacaatgcataatatatgcaaggt 18256929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 33824887 - 33824927
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||| |||||| |||||||||||| ||||||||||||    
T  33824887 ttagctcagttgataaggacaatgcataatatatgcaaggt 33824927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 31974 - 31937
Alignment:
Q  161 gctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  31974 gctcagttgatagggacaatgcataatatatgcaaggt 31937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 132267 - 132304
Alignment:
Q  157 tttagctcaattgatagggacaatgcatagtatatgca 194  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  132267 tttagctcaattgatagggaaaatgcataatatatgca 132304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 1642 - 1682
Alignment:
Q  158 ttagctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  1642 ttagctcaattagtatggacaatgcatagtatatgcaaggt 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 36257 - 36301
Alignment:
Q  155 agtttagctcaattgatagggac-aatgcatagtatatgcaaggt 198  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||    
T  36257 agtttagctcaattgatagagacaaatgcatagaatatgcaaggt 36301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 99047 - 99083
Alignment:
Q  162 ctcaattgatagggacaatgcatagtatatgcaaggt 198  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  99047 ctcagttgatagggacaatgcataatatatgcaaggt 99083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 223685 - 223645
Alignment:
Q  157 tttagctcaattgatagggacaatgcatagtatatgcaagg 197  Q
    |||| ||||||||||||||||||| |||| |||||||||||    
T  223685 tttaactcaattgatagggacaatccataatatatgcaagg 223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University