View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_110 (Length: 266)

Name: NF16091_high_110
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_110
NF16091_high_110
[»] chr4 (13 HSPs)
chr4 (15-257)||(3809228-3809470)
chr4 (22-249)||(3920419-3920646)
chr4 (15-249)||(3816814-3817045)
chr4 (22-252)||(4024454-4024684)
chr4 (16-252)||(3986211-3986447)
chr4 (16-252)||(3956160-3956396)
chr4 (16-250)||(3800804-3801036)
chr4 (16-230)||(4001522-4001736)
chr4 (22-249)||(3933643-3933867)
chr4 (16-252)||(4009212-4009448)
chr4 (16-252)||(4217856-4218092)
chr4 (100-250)||(4018017-4018167)
chr4 (22-243)||(3963948-3964166)
[»] chr5 (1 HSPs)
chr5 (19-252)||(13397166-13397399)
[»] chr8 (1 HSPs)
chr8 (22-194)||(7074733-7074905)
[»] chr3 (1 HSPs)
chr3 (23-91)||(23454238-23454306)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 3809228 - 3809470
Alignment:
Q  15 catattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaact 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809228 catactttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaact 3809327  T
Q  115 acctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  3809328 acctcccgacccatttcttgtagaatgtcatgcatagatataacattatattcagaaatagttataagagctttgtctttcaagctttctaacccagcag 3809427  T
Q  215 ccactgaattatcactgttagaatctttcaataaaagtattat 257  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  3809428 ccactgaattatcactgttagaatctttcaataaaagtgttat 3809470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 3920646 - 3920419
Alignment:
Q  22 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 121  Q
    ||||||||||||||||||||||||||| |||| |||||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920646 tttaccttgtcatttttcaatacatcacaaatgtcatcaacatcccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 3920547  T
Q  122 gacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagccactga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||  |    
T  3920546 gacccatttcttgtagaatgtcatgcatagatataacattatcttcagaaatagttataagagctttatctttcaagctttctaacccaccagccacgta 3920447  T
Q  222 attatcactgttagaatctttcaataaa 249  Q
    ||||||||| | | ||||||||||||||    
T  3920446 attatcactatcacaatctttcaataaa 3920419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 3816814 - 3817045
Alignment:
Q  15 catattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||   | ||||||||||| |||||     
T  3816814 catattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttccaaggt---cactagattcttgccgaaca 3816910  T
Q  115 acctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcag 214  Q
    | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||| |||    
T  3816911 atctcccaacccatttcttgaagaatgtcatgcatagatataacattatcttcagaaatagttataagagctttatctttcaacgtttctaacccaccag 3817010  T
Q  215 ccactgaattatcactgttagaatctttcaataaa 249  Q
    ||||  |||||||||| | | ||||||||||||||    
T  3817011 ccacgtaattatcactatcacaatctttcaataaa 3817045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 4024454 - 4024684
Alignment:
Q  22 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 121  Q
    |||||||||||||||| |||||||||| |||| |||||  ||| |||||||||||||||||||  ||||| | | ||||||||||||||||| |||||||    
T  4024454 tttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcactagattcttggcgaacaacctccc 4024553  T
Q  122 gacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagccactga 221  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||| |||||||| ||| ||||||||||    
T  4024554 gacccatttcttgtagaatgtcatgcatagatataatattatcttcagaaatagttataagagctttatctctcaacctttctaaaccaacagccactga 4024653  T
Q  222 attatcactgttagaatctttcaataaaagt 252  Q
    |||||| || | | |||||||||||||||||    
T  4024654 attatcgctttcacaatctttcaataaaagt 4024684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 3986211 - 3986447
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    ||||||| ||||||||||||||| || |||||  ||||||||||  ||| |||||||||||||||||| |  |||| ||| ||||||||||||||||| |    
T  3986211 atattttataccttgtcattttttaagacatcgcaaatttcatcatgatcccataatcgactgcgtttgtttgggtattcactagattcttggcgaacaa 3986310  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||| |||| ||||    
T  3986311 cctcccgacccatttcttgaagaatgtcatgcatagatataacattatcttcagaaatagttatgagagctttatctttcaacctttctatcccaacagc 3986410  T
Q  216 cactgaattatcactgttagaatctttcaataaaagt 252  Q
    ||||||||||||||  | | |||||||||||||||||    
T  3986411 cactgaattatcaccttcacaatctttcaataaaagt 3986447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 3956396 - 3956160
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||||  |||||||||||| ||||  ||||| ||| || |||||||||||||| |    
T  3956396 atattttttaccttgtcatttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcactggattcttggcgaacaa 3956297  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||| |||||||| |||||||| ||| ||||    
T  3956296 cctcccgacccatttcttgtagaatgtcatgcatggatataacattatcttcagaaattgttataagagatttatctttcaacctttctaaaccaacagc 3956197  T
Q  216 cactgaattatcactgttagaatctttcaataaaagt 252  Q
    ||||| ||||||||| | | |||||||||||||||||    
T  3956196 cactgcattatcactttcaaaatctttcaataaaagt 3956160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3800804 - 3801036
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    ||||||||||||||||||||||||||||||||||| ||   ||| |||| ||||||  |||||| ||||  ||||| ||| ||| ||||||||||||| |    
T  3800804 atattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcactatattcttggcgaacaa 3800903  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||| || |||||||||||| ||||    
T  3800904 cctcccgacccatttctcatagaatgtcatgcatagatataacattatc--gagaaatagttataagagctttatcttttaacctttctaacccaacagc 3801001  T
Q  216 cactgaattatcactgttagaatctttcaataaaa 250  Q
    ||||||||||||||| | | ||||||||| |||||    
T  3801002 cactgaattatcactttcacaatctttcagtaaaa 3801036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 4001522 - 4001736
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    |||||||||||||||||||||||||||||||   |||| ||||| |||| |||||| ||||| |||||   ||||| ||| ||||||||||||||||| |    
T  4001522 atattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcactagattcttggcgaacaa 4001621  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |||||||| ||| || |    
T  4001622 cctcccgacccatttcttgtaaaatgtcatgcatagatacaacattatatttcgaaatagttataagagctttatctttcaacctttctaaaccaacaac 4001721  T
Q  216 cactgaattatcact 230  Q
    ||||||||| |||||    
T  4001722 cactgaattgtcact 4001736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 3933867 - 3933643
Alignment:
Q  22 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 121  Q
    ||||||||||||||||||||||||||| |||| |||||   || |||||||||||||| |||| || |||   | ||||||||||| ||||| |||||||    
T  3933867 tttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttccaaggt---cactagattcttgccgaacaacctccc 3933771  T
Q  122 gacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagccactga 221  Q
     |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||| |||||||  |    
T  3933770 aacccatttcttgaagaatgtcatgcatagatataacattatcttcagaaatagttataagagctttatctttcaacgtttctaacccaccagccacgta 3933671  T
Q  222 attatcactgttagaatctttcaataaa 249  Q
    ||||||||| | | ||||||||||||||    
T  3933670 attatcactatcacaatctttcaataaa 3933643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 4009212 - 4009448
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    |||| |||||||||||| ||||||||||||||||| ||   ||| |||| ||||| | |||||| ||||  ||| | ||| ||||||||||  ||||| |    
T  4009212 atatattttaccttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcactagattcttaacgaacaa 4009311  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||| || ||||||||||||  |||    
T  4009312 cctcccgacccatttcttgtagaatgtcatgcatagatattacattatcttcagaaattgttataagagctttatcttttaacctttctaacccaatagc 4009411  T
Q  216 cactgaattatcactgttagaatctttcaataaaagt 252  Q
    ||||| ||||||||| | | |||||||||||||||||    
T  4009412 cactgcattatcactttcaaaatctttcaataaaagt 4009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 4217856 - 4218092
Alignment:
Q  16 atattttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaacta 115  Q
    |||||||||||||||||||||| ||||||||   |||| ||||| |||| |||||| |||||  ||||   ||||| ||   |||||||| ||||||| |    
T  4217856 atattttttaccttgtcattttccaatacatagcaaatgtcatcaggatcccataaccgactttgtttactagggtctttaatagattctaggcgaacaa 4217955  T
Q  116 cctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagc 215  Q
    ||||||||||||| | |||| ||| ||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||| |||||||||||| | ||    
T  4217956 cctcccgacccatcttttgttgaaagtcatgcatagatattacattatcttcagaaatagtaataagagctttatctttcaacctttctaacccaacggc 4218055  T
Q  216 cactgaattatcactgttagaatctttcaataaaagt 252  Q
    ||||||||||||||| | | |||||||||||||||||    
T  4218056 cactgaattatcactttcataatctttcaataaaagt 4218092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 4018017 - 4018167
Alignment:
Q  100 gattcttggcgaactacctcccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagc 199  Q
    |||||||||||||| |  |||| |||||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||| |||| |||||||| |    
T  4018017 gattcttggcgaacaatttccctacccatttcttgtataatgtcatgcatggatataacattatctttagaaaaagatataagacctttatctttcaacc 4018116  T
Q  200 tttctaacccagcagccactgaattatcactgttagaatctttcaataaaa 250  Q
    |||||||||||   || |||||||||||||| | |||||||||||| ||||    
T  4018117 tttctaacccactggctactgaattatcactttcagaatctttcaacaaaa 4018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 3964166 - 3963948
Alignment:
Q  22 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 121  Q
    ||||||||||||||||| ||||| |||||||| |||||   || |||||||||||| ||  || |||||| | | || |||||||||||||| | |||||    
T  3964166 tttaccttgtcattttttaatacttcataaatgtcatc---atcccataatcgactacggcttccagggtctccacttgattcttggcgaacaatctccc 3964070  T
Q  122 gacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagccactga 221  Q
     |||||| ||||||| |||  ||||||||||||||||||||| |||||||| ||  | |||| |||| |||||||| ||||||||||||   || |||||    
T  3964069 tacccatgtcttgtataattccatgcatagatataacattatgtttagaaacagaaacaagatctttatctttcaacctttctaacccactggctactga 3963970  T
Q  222 attatcactgttagaatctttc 243  Q
    ||||||||| | ||||||||||    
T  3963969 attatcactttcagaatctttc 3963948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 13397166 - 13397399
Alignment:
Q  19 ttttttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacct 118  Q
    ||||||||||||||||||||||||||||| || ||   ||| |||| |||||||||||||| ||||  ||||| ||| ||||||||||||||||| ||||    
T  13397166 ttttttaccttgtcatttttcaatacatcgtagataatatcaggatcccataatcgactgcattttctagggtcttcactagattcttggcgaacaacct 13397265  T
Q  119 cccgacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtctttcaagctttctaacccagcagccac 218  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  ||| ||    
T  13397266 cgcgacccatttcctgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttatctttcaacctttctaacccaatagctac 13397365  T
Q  219 tgaattatcactgttagaatctttcaataaaagt 252  Q
     ||||||||||| | | |||||||||||||||||    
T  13397366 agaattatcactttcataatctttcaataaaagt 13397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 7074733 - 7074905
Alignment:
Q  22 tttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggtgttctctagattcttggcgaactacctccc 121  Q
    ||||||||||||| ||||||||||| |||||| ||||| |||| | ||| ||| || || ||| |||| | |||   ||||||||||||||| | |||||    
T  7074733 tttaccttgtcatctttcaatacatgataaatgtcatcaggatccaatagtcggcttcggtttccaggttcttcaacagattcttggcgaacaatctccc 7074832  T
Q  122 gacccatttcttgtagaatgtcatgcatagatataacattatctttagaaatagttataagagctttgtcttt 194  Q
     | |  ||||||||| |||||||||||| |||| ||   | | || ||||||||||| ||||||||| |||||    
T  7074833 tagctgtttcttgtataatgtcatgcattgatacaatgctttgttgagaaatagttacaagagctttatcttt 7074905  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 23454238 - 23454306
Alignment:
Q  23 ttaccttgtcatttttcaatacatcataaatttcatctggattccataatcgactgcgtttttcagggt 91  Q
    |||||||||  ||||||||||||||| | ||||| || | |||||| |||||||| |||||| ||||||    
T  23454238 ttaccttgttttttttcaatacatcagatatttcttcagcattccacaatcgacttcgttttccagggt 23454306  T

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