View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_115 (Length: 261)

Name: NF16091_high_115
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_115
NF16091_high_115
[»] chr4 (3 HSPs)
chr4 (20-261)||(23990943-23991185)
chr4 (18-261)||(23984279-23984521)
chr4 (18-224)||(23967347-23967555)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 23990943 - 23991185
Alignment:
Q  20 attgatgtggttgaaacgaaaccttctcctgcaatcagtataatagaaacagattgtgaagttgattttgctccccctcttgattacaaagaacctgaaa 119  Q
    |||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23990943 attgatatagttgaaacaaaaccttctcccgcaatcagtataatagaaacagattgtgaagttgattttgctccccctcttgattacaaagaacctgaaa 23991042  T
Q  120 agcctttgccatctgatttgtctcataaggaatctccacaaggttataattcttttattatatgttagaatatgcttgaagaattttgtgtttgttttta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23991043 agcctttgccatctgatttgtctcataaggaatctccacaaggttatgattcttttattatatgttggaatatgcttgaagaattttgtgtttgttttta 23991142  T
Q  220 agtgataatttcactagagga-tttaaatattttgttttcatt 261  Q
    |||||||||||||| ||| || ||||||||||| |||| ||||    
T  23991143 agtgataatttcaccagaagattttaaatatttcgtttgcatt 23991185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 23984279 - 23984521
Alignment:
Q  18 acattgatgtggttgaaacgaaaccttctcctgcaatcagtataatagaaacagattgtgaagttgattttgctccccctcttgattacaaagaacctga 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23984279 acattgatgtggttgaaacgaaaccttctcccgcaatcagtataatagaaacagattgtgaagttgattttgctccccctcttgattacaaagaacctga 23984378  T
Q  118 aaagcctttgccatctgatttgtctcataaggaatctccacaaggttataattcttttattatatgttagaatatgcttgaagaattttgtgtttgtttt 217  Q
     |||||||||||||||||||||||||||||| || ||| |||||||| | ||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  23984379 gaagcctttgccatctgatttgtctcataagaaacctctacaaggttgtgattcttttattatatgttgaaatatgcttgaagaa-tttgtgtttgtttt 23984477  T
Q  218 taagtgataatttcactagaggatttaaatattttgttttcatt 261  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  23984478 taagtgaaaatttcactagaggatttaaatattttgtttgcatt 23984521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 23967347 - 23967555
Alignment:
Q  18 acattgatgtggttgaaacgaaaccttctcctgcaatcagtataatagaaacagattgtgaagttgattttgctccccctcttgattacaaagaacctga 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||    
T  23967347 acattgatgtggttgaaacgaaaccttctcccgcaatcagtataattgaaatagactgtgaagttgattttgctccacctcttgattacaaagaacctga 23967446  T
Q  118 aaagcctttgccatctgatttgtctcataaggaatctccacaaggttataattcttttattatatgttagaatatgcttgaagaattt--tgtgtttgtt 215  Q
     |||||||||||||||||||||||||||||| ||  || |||||||| | ||||||||||||| |||| |||||||||||||||||||   |||||||||    
T  23967447 gaagcctttgccatctgatttgtctcataagaaacatcgacaaggttgtgattcttttattatctgttggaatatgcttgaagaatttcacgtgtttgtt 23967546  T
Q  216 tttaagtga 224  Q
    || ||||||    
T  23967547 ttcaagtga 23967555  T

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