View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_118 (Length: 256)

Name: NF16091_high_118

Description: NF16091

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16091_high_118

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 72; E-Value: 8e-33

Query Start/End: Original strand, 18 - 117

Target Start/End: Original strand, 43869057 - 43869156

Alignment:

Q	18	ctttcttctcctatgatcagttacatagttgcatccccttctttccaatcacatatcttcgttttccgtgattccaggtagtgttaatctgatctatgtc	117	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43869057	ctttcttctcatatgatcagttatataatcgcatccccttatttccaatcgcatatctacgttttccgtgattccaggtagtgttaatctgatctatgtc	43869156	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2

Raw Score: 69; E-Value: 5e-31

Query Start/End: Original strand, 177 - 253

Target Start/End: Original strand, 43869216 - 43869292

Alignment:

Q	177	catatttgatttgagaatcgcatctcatcactgacatcgccgtcgtttacatgaccacattcgtttcttctcactcg	253	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	43869216	catatttgatttgagaatcgcatctcatcactgacatcgccgtcgtttacatgaccacattcgtttgttttcactcg	43869292	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 177 - 237

Target Start/End: Complemental strand, 43869526 - 43869466

Alignment:

Q	177	catatttgatttgagaatcgcatctcatcactgacatcgccgtcgtttacatgaccacatt	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|
T	43869526	catatttgatttgagaattgcatctcatcaccgtgatcgtcgtcgtttccaggaccacatt	43869466	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]