View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_123 (Length: 245)

Name: NF16091_high_123
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_123
NF16091_high_123
[»] chr6 (1 HSPs)
chr6 (1-230)||(31556066-31556298)
[»] chr4 (2 HSPs)
chr4 (1-78)||(8065868-8065945)
chr4 (1-78)||(14576695-14576772)
[»] chr1 (2 HSPs)
chr1 (1-75)||(2465679-2465753)
chr1 (1-76)||(2501468-2501543)
[»] chr7 (4 HSPs)
chr7 (1-78)||(31454798-31454875)
chr7 (1-78)||(19804938-19805015)
chr7 (10-71)||(30738774-30738835)
chr7 (6-74)||(3551675-3551743)
[»] chr3 (2 HSPs)
chr3 (4-70)||(46584574-46584640)
chr3 (1-77)||(33099536-33099612)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-78)||(240603-240680)
[»] chr2 (2 HSPs)
chr2 (1-78)||(20936937-20937014)
chr2 (37-78)||(30241332-30241373)
[»] chr8 (1 HSPs)
chr8 (6-78)||(7057499-7057571)
[»] chr5 (1 HSPs)
chr5 (46-78)||(24489721-24489753)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31556066 - 31556298
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatcccttgaaccatcctactactttcat 100  Q
    ||||||||||||||||||||||||||||| |||||||||||  |  |||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  31556066 tacgagtattttttacaaaagcagatatggggaagagcactatagcaccctactcataggatacccattgtcatcccttgaagcatcctactactttcat 31556165  T
Q  101 ccaaatcttccaagaaaacaagcaatnnnnnnntagaggttttgcattctctttaatgacacattcgttagcacatgaattattctccaattgagtaaaa 200  Q
    || |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31556166 ccgaatcttccaagaaaacaagcaataaaaaaacagaggttttgcattctctttaatgacacattcgttagcacatgaattattctccaattgagtaaaa 31556265  T
Q  201 ctacgtctg---agtatatcgtcccatgttgat 230  Q
    |||||||||   |||||||||||||||||||||    
T  31556266 ctacgtctgatcagtatatcgtcccatgttgat 31556298  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8065945 - 8065868
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    ||||||||||||||| ||| ||||||||| ||| | |||||| | |||||||| ||| ||||||||||||||||||||    
T  8065945 tacgagtattttttataaatgcagatatggggatgggcactgtagtaccctacccattggatacccattgccatccct 8065868  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 14576772 - 14576695
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||| |||||||||| ||| || | |||| ||| | |||||| |||||||||| ||| || |||||||||||||||||    
T  14576772 tacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattgggtacccattgccatccct 14576695  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2465679 - 2465753
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatc 75  Q
    ||||||||||||||||||| ||| |||||||||| ||||||| | |||| ||| |||| | ||||||||| ||||    
T  2465679 tacgagtattttttacaaacgcatatatgaggaaaagcactgtagtaccttacccataaggtacccattgtcatc 2465753  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2501543 - 2501468
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatcc 76  Q
    ||||||||||||||||||| ||   |||| ||||| |||||| | |||||||| |||||| ||||||||| |||||    
T  2501543 tacgagtattttttacaaacgcgtgtatggggaagggcactgtagtaccctacccatagggtacccattgtcatcc 2501468  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31454875 - 31454798
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    ||||||||||||||| ||| || |||||| ||| |  || || | |||||||||||| ||||||||||||||||||||    
T  31454875 tacgagtattttttataaatgcggatatggggacggacattgtagtaccctactcattggatacccattgccatccct 31454798  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19805015 - 19804938
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||| |||||||||| ||| || | |||||||| | |||||| | |||||||| ||| || |||||||||||||||||    
T  19805015 tacgggtattttttataaatgcgggtatgaggacgggcactgtagtaccctacccattgggtacccattgccatccct 19804938  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 30738774 - 30738835
Alignment:
Q  10 tttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgc 71  Q
    |||||||||| || | |||||| ||| |||||| | ||||||||||||||| ||||||||||    
T  30738774 tttttacaaatgcgggtatgagaaagggcactgtagtaccctactcatagggtacccattgc 30738835  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 3551675 - 3551743
Alignment:
Q  6 gtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccat 74  Q
    ||||||||||||||  | | |||||||||| | |||| | ||||||||| ||||| |||||||||||||    
T  3551675 gtattttttacaaatacgggtatgaggaagggtactgtagtaccctacttatagggtacccattgccat 3551743  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 46584640 - 46584574
Alignment:
Q  4 gagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattg 70  Q
    ||||||| ||| |||| || | ||||||||||||||||| | |||||||||||| || |||||||||    
T  46584640 gagtattattttcaaacgcgggtatgaggaagagcactgtagtaccctactcattgggtacccattg 46584574  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33099612 - 33099536
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccc 77  Q
    ||||||||||| ||||||| ||   ||||  |||| |||||| | |||||||||||||||  |||||||||||||||    
T  33099612 tacgagtatttattacaaacgcgagtatggagaagggcactgtagtaccctactcatagggcacccattgccatccc 33099536  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 240603 - 240680
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||| |||||||||| ||| || | |||| ||| | |||||| |||||||||| ||| || |||||||||||||||||    
T  240603 tacgggtattttttataaatgcgggtatggggacgggcactgtaataccctacccattgggtacccattgccatccct 240680  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20937014 - 20936937
Alignment:
Q  1 tacgagtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||| ||||||||||||||  | | |||||||| | |||||| | |||||||| |||||| | |||||||||||||||    
T  20937014 tacgggtattttttacaaatacgggtatgaggatgggcactgtagtaccctacccatagggtgcccattgccatccct 20936937  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 30241373 - 30241332
Alignment:
Q  37 gcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||||| | |||||||||||| ||||||||||||||||||||    
T  30241373 gcactgtagtaccctactcattggatacccattgccatccct 30241332  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 7057571 - 7057499
Alignment:
Q  6 gtattttttacaaaagcagatatgaggaagagcactgaaataccctactcataggatacccattgccatccct 78  Q
    |||||||||||||| ||||||||   |||| |||||| | |||||||| |||||  |||||||||| ||||||    
T  7057571 gtattttttacaaatgcagatatagagaagggcactgtagtaccctacccatagagtacccattgctatccct 7057499  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 24489721 - 24489753
Alignment:
Q  46 taccctactcataggatacccattgccatccct 78  Q
    ||||||||||||||| |||||||||||||||||    
T  24489721 taccctactcatagggtacccattgccatccct 24489753  T

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