View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_125 (Length: 242)
Name: NF16091_high_125
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_125 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3015405 - 3015516
Alignment:
| Q |
1 |
atcatcttgaatcaaaagaaatcaatacctggaaaattcatttctgttcagatttatagtggctcagaagttgatcctagtaagtacattttacacacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015405 |
atcatcttgaatcaaaagaaatcaatacctggaaaattcatttctgttcagatttatagtggctcagaagttgatcctagtaagtacattttacacacta |
3015504 |
T |
|
| Q |
101 |
acactgtcaatg |
112 |
Q |
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|||||||||||| |
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| T |
3015505 |
acactgtcaatg |
3015516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 18359990 - 18360101
Alignment:
| Q |
1 |
atcatcttgaatcaaaagaaatcaatacctggaaaattcatttctgttcagatttatagtggctcagaagttgatcctagtaagtacattttacacacta |
100 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
18359990 |
atcaccttgaatcaaaagaaatcaatacctgggaaattcatttctgttcagatttatagtggcacagaagtttatcctagtaagtacattttacacacta |
18360089 |
T |
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| Q |
101 |
acactgtcaatg |
112 |
Q |
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|||||||||||| |
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| T |
18360090 |
acactgtcaatg |
18360101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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