View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_high_127 (Length: 240)
Name: NF16091_high_127
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_127 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 35885039 - 35884832
Alignment:
| Q |
14 |
cagagacccattcaaactgaacagtaatggtcttcttcatgactcccgcaaatccctccctcggtggttactattcccacgaaaccataactgtcgagcc |
113 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35885039 |
cagagacccatttaaattgaacagtaatggtcctctccatgactctcgcgaatccctccctcgacggttactattcccacgaaaccataactgtcgagcc |
35884940 |
T |
|
| Q |
114 |
ctacgtgtgctagacaaaggctcctgcaaacacgcagactatataaaggggactctcgatagtccccaatgttagaatcctttaactctctttaccccat |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
35884939 |
ctacgtgtgctagacaacggctcctgcaaacacgcagactatataaaggggattctcaatagtccccaaggttaaaatcctttaactctctttaccccat |
35884840 |
T |
|
| Q |
214 |
tttcactc |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
35884839 |
tttcactc |
35884832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 19529547 - 19529585
Alignment:
| Q |
151 |
actatataaaggggactctcgatagtccccaatgttaga |
189 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
19529547 |
actatataaaggggactctcaatagtccccaaggttaga |
19529585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University