View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_130 (Length: 238)
Name: NF16091_high_130
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_130 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45270467 - 45270248
Alignment:
| Q |
1 |
tgattaccacacattcaaaatggatcctacgtaaagtgaagagacttgcatgaatattggaaatgaatctcacgtagaatagtgagatctacatgaattt |
100 |
Q |
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| T |
45270467 |
tgattatcatacatttgaaatggatcctacataatgtgaagagacttacatgaatattggaaatgaatc-cacgtaaaatagtgagatctacatgaattt |
45270369 |
T |
|
| Q |
101 |
catatagtgaatgttagaaaaagtgctagagagagtgttgttaacatttttcattacatcattgtttnnnnnnnnnntaaatctataatgatatttatat |
200 |
Q |
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||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
45270368 |
catatggtgaatgttagacaaagtgctagagagagtattcttaacatttttcattacatcattgttttaaataaaaaaaaatctataatcatatttatat |
45270269 |
T |
|
| Q |
201 |
tgtgaatgggagtttcgtggt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45270268 |
tgtgaatgggagtttcgtggt |
45270248 |
T |
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