View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_139 (Length: 232)
Name: NF16091_high_139
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_139 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 39027003 - 39026849
Alignment:
| Q |
61 |
atgcaataataccttttctaggtttttcttgtttcctgcattcaaatgagcaaaaccttcatcatttgcagtatcagatgtagatgtaatattctgattt |
160 |
Q |
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| T |
39027003 |
atgcaataataccttttctagatttttcttgtttactgcattcaaatgagcagaaccttcatcatttgcagtatcagatgtagatgtagaattctgattt |
39026904 |
T |
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| Q |
161 |
ccctccaagtccttactattactatttattactccagatatagatggatcagtat |
215 |
Q |
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| T |
39026903 |
ccctccaagtccttaccattaccatttattactccagatatagatggatcagtat |
39026849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 39031669 - 39031589
Alignment:
| Q |
67 |
taataccttttctaggtttttcttgtttcctgcattcaaatgagcaaaaccttcatcatttgcagtatcagatgtagatgt |
147 |
Q |
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| T |
39031669 |
taataccttttctagatttttcttgtttactgcattgaaatgagcagaattttcgtcattttcagtattagatgtagatgt |
39031589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18185059 - 18184998
Alignment:
| Q |
1 |
tacatattatgctagataaataaaaacaaaaacagaatgaaaatgctataagagaatagcat |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18185059 |
tacatattatgctagataaataaaaacaaaaacagaatgaaaatgctataagaaaatagcat |
18184998 |
T |
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