View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_high_148 (Length: 224)
Name: NF16091_high_148
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_148 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 45373883 - 45374076
Alignment:
| Q |
13 |
gagagatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctga |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45373883 |
gagaaatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattatga |
45373982 |
T |
|
| Q |
113 |
ggataaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatatttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45373983 |
ggataaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaacttaatgatttttgacacaagatttggcaacatatttt |
45374076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 45389068 - 45389246
Alignment:
| Q |
16 |
agatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctgagga |
115 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
45389068 |
agatgaaagcgattaatagacggagtacatagcgtgtactaattaacaattattgaaagtatagtaagcattgagcaaa---------ctattgtgaggc |
45389158 |
T |
|
| Q |
116 |
taaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatatttt |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
45389159 |
taaaatttactagttgcaacttgcaagttgcattctcgataagtcaacttaagctcaataa---ttgacacaagatttggcaacatatttt |
45389246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University