View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_151 (Length: 218)

Name: NF16091_high_151
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_151
NF16091_high_151
[»] chr4 (9 HSPs)
chr4 (1-212)||(4342593-4342804)
chr4 (1-174)||(4323242-4323415)
chr4 (1-174)||(4358099-4358272)
chr4 (1-175)||(4126577-4126751)
chr4 (1-175)||(4333240-4333414)
chr4 (1-175)||(4350919-4351093)
chr4 (1-175)||(4135684-4135858)
chr4 (1-176)||(4330173-4330351)
chr4 (49-173)||(25567613-25567737)
[»] chr6 (19 HSPs)
chr6 (1-183)||(5105012-5105200)
chr6 (1-174)||(5184092-5184265)
chr6 (1-174)||(5174555-5174728)
chr6 (1-174)||(5368143-5368322)
chr6 (49-174)||(5423436-5423561)
chr6 (1-175)||(5093729-5093903)
chr6 (54-174)||(5356815-5356935)
chr6 (1-175)||(5149102-5149276)
chr6 (49-174)||(5069265-5069390)
chr6 (1-174)||(5159641-5159814)
chr6 (50-174)||(5075920-5076044)
chr6 (1-181)||(5341376-5341556)
chr6 (1-126)||(5431144-5431269)
chr6 (1-174)||(5276394-5276567)
chr6 (88-174)||(5394732-5394818)
chr6 (50-174)||(5444775-5444899)
chr6 (55-175)||(5692419-5692539)
chr6 (1-174)||(5134045-5134218)
chr6 (1-38)||(5348236-5348273)
[»] chr3 (1 HSPs)
chr3 (52-174)||(48015496-48015618)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-148)||(10805-10952)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4342804 - 4342593
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4342804 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgactccgaccggataatcagcaa 4342705  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaacataaaataaagtcaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4342704 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaacataaaataaagtcaagat 4342605  T
Q  201 atcttcatctca 212  Q
    ||||||||||||    
T  4342604 atcttcatctca 4342593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4323242 - 4323415
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || || |||| ||||||||    
T  4323242 ccccacatccctagtagtagaacatcatttgtttgttgagtgtctagaagttgaatcatatcttgcactcgagaatcgatacccacaggattatcagcaa 4323341  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
     |||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  4323342 cgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatatccttgataacctcactttcgttccta 4323415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4358272 - 4358099
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||| || |||| ||||||||    
T  4358272 ccccacatccctagtagtagagcatcgtttgattgttgagtttctaggagttgaatcatatcttgcactcgagaatcgactcctactggattatcagcaa 4358173  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||    
T  4358172 tgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatatccctgataacctcactttcattccta 4358099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4126577 - 4126751
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||||||||    
T  4126577 ccccacatccccagcagtagaacatcatttgactgttgagtgtctagaagttgaatcatatcttgcactcgagattcgactccgacaggattatcagcaa 4126676  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||| ||| |||||||    
T  4126677 tgaacaagtctgtcttgtcaagcaaatttgtaacattttcaacaatatccttgataacctcacattcgttcctat 4126751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4333414 - 4333240
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||| ||||| |||||||| | ||||||| |||||||||||| |||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||    
T  4333414 ccccacattcctagcagtagaactttatttgatagttgagtgtctagaagttgaatcatatcttgtactcgagattcgactcctaccggatgatcagcaa 4333315  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||| |||||||    
T  4333314 tgaacaagtcagtcttgtcaagcaaacgtgcaacattttcaacaatatccttgatgacctcactttcgttcctat 4333240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4351093 - 4350919
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||| ||||| |||||||||||||||  |||| |||| ||| || |||| |||| |||    
T  4351093 ccccacatccctattagtagaacatcttttgattggtgagtgtctagaagtttaatcatatcttgcacctgagattcgactcccacaggattatcaacaa 4350994  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||| |||||| ||||||||| ||||||| ||| ||||||||||||| | |||||||||||||||||||||||||    
T  4350993 tgaataagtctatcttgtcaaacaaacgtgtaatattttcaacaatacccttgataacctcactttcattcctat 4350919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4135684 - 4135858
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||||   | ||||||| |  ||||||||||||||| |||||||||| |||| ||  || ||||  |||||||    
T  4135684 ccccacatccctagtagtagaacatcatttgaaaatggagtgtccagtagttgaatcatatctagcactcgagattcgactctaactggatggtcagcaa 4135783  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||||| ||||||||||||||||||| || |||| |||||||||||||| |||||| |||||||||| |||||||    
T  4135784 tgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatatccttgatatcctcactttcgttcctat 4135858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4330351 - 4330173
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttga---gtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcag 97  Q
    ||||||||| |||  ||||||||||||||||||||||||   ||||||| |||||||||||| |||| ||||||||| |  ||| | ||||||| |||||    
T  4330351 ccccacatctctaagagtagaacatcatttgattgttgatgagtgtctagaagttgaatcatctcttacactcgagatttaatttccaccggattatcag 4330252  T
Q  98 caatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctata 176  Q
    ||||||| |||||| |||| ||||| ||| || ||||||||||||||||||  |||||||| || ||||||||||||||    
T  4330251 caatgaataagtctatcttatcaagaaaaagtgtaacattttcaacaatattcttgataacttctctttcattcctata 4330173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 25567737 - 25567613
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    ||||||||||||| || ||||||||  || | ||| || |||| || |||||  | ||||| ||||||||| |||||||| |  |  |||||||||||||    
T  25567737 agttgaatcatattttccactcgaggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaacaatat 25567638  T
Q  149 ctttgataacctcactttcattcct 173  Q
    | |||||| ||||||||||||||||    
T  25567637 ccttgatagcctcactttcattcct 25567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5105012 - 5105200
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagt------gtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    ||||||||||||||||| ||||||||||||||||||||  |      |||||  ||||||||||||||||| |||||||| || | ||| ||||||| ||    
T  5105012 ccccacatccctagtaggagaacatcatttgattgttggatatcttggtctagcagttgaatcatatcttgaactcgagattcaactcccaccggattat 5105111  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaaca 183  Q
     |||||| ||||| |||||||||||||||||| |  | ||||| | ||||||||| |||||||||||||||||||||||| | ||||||    
T  5105112 tagcaataaacaaatctgtcttgtcaagcaaatgcgttacattgttaacaatatccttgataacctcactttcattcctacataaaaca 5105200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5184092 - 5184265
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||| ||||||||||||| |||| |||||||| ||||  ||||||  | |||||||| |||| | |||||||| |||| ||| ||||||| ||| ||||    
T  5184092 ccccagatccctagtagtataacaccatttgatcgttggatgtctagcaattgaatcacatctcgtactcgagattcgactcccaccggattatccgcaa 5184191  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| ||||||||| | |||||| || |||||||||||||||| ||||||||  |||||||||||||||||    
T  5184192 tgaacaaatctgtcttgcctagcaaatgtgtaacattttcaacaatgtctttgattgcctcactttcattccta 5184265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5174728 - 5174555
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||||||||  |||||||||||||| ||||||||  ||||||  | |||||||||||||||||||||||| |||| ||| ||||||| ||||||||    
T  5174728 ccccacatccctatcagtagaacatcattagattgttggatgtctagcaattgaatcatatcttgcactcgagattcgagtcccaccggattatcagcaa 5174629  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
      |||||||||||||||||||  ||||||  ||| || ||||||||||  || ||  | |||||||||||||||    
T  5174628 caaacaagtctgtcttgtcaataaaacgtgaaactttgtcaacaatattcttaatcgcttcactttcattccta 5174555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5368322 - 5368143
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtct------ataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    ||||||||||| ||||| ||||||||||||||||||||  | |||      || |||||||||||| ||||||||||||| || | ||| || |||| ||    
T  5368322 ccccacatccccagtagaagaacatcatttgattgttggatatcttgctccattagttgaatcataccttgcactcgagattcaactcccactggattat 5368223  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| ||||| |||||||||||||||  |||  ||||||||||||||||||| | |||| ||| |||||||||||||    
T  5368222 cagcaataaacaattctgtcttgtcaagcttacgcgtaacattttcaacaatatcctggatagccttactttcattccta 5368143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 5423561 - 5423436
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    |||||||||||||||||||||||||| || | ||| || |||| || |||||| ||||| |||||||||||||||  |||  ||||||||||||||||||    
T  5423561 agttgaatcatatcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttcaacaatat 5423462  T
Q  149 ctttgataacctcactttcattccta 174  Q
    | || ||| |||||||||||||||||    
T  5423461 ccttaatagcctcactttcattccta 5423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5093903 - 5093729
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| ||||| || |||||||||||||||||  ||||||  |||| ||| | |||||||||||||||| | | ||| || || | ||||||||    
T  5093903 ccccacatcccaagtagcagtacatcatttgattgttggatgtctaacagttcaataacatcttgcactcgagaaccaactcccacaggtttatcagcaa 5093804  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    ||||||| |||||||| ||||||||| |  |||  |||||||||||||| |||||  ||| | ||||||||||||    
T  5093803 tgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatccttgatggccttattttcattcctat 5093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 5356815 - 5356935
Alignment:
Q  54 aatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttg 153  Q
    ||||||||||||||| ||||| || | ||| ||||||| || |||||  || |||||||||||||||||||||||| ||| ||||| ||||||||| |||    
T  5356815 aatcatatcttgcacacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttttaacaatatccttg 5356914  T
Q  154 ataacctcactttcattccta 174  Q
    ||| | |||||||||||||||    
T  5356915 atagcttcactttcattccta 5356935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5149102 - 5149276
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||| ||||||| ||| ||||||||||||| |||  ||||||  ||||||||||||||||| |||||||  || | |||||| |||| || |||||    
T  5149102 ccccacattcctagtaatagtacatcatttgatttttggatgtctagcagttgaatcatatcttgtactcgagtttcaactccgactggattatgagcaa 5149201  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
     ||||||||| |||||||| |||||  |  |||| |||||||||||||   |||| | ||||||||| |||||||    
T  5149202 cgaacaagtcggtcttgtctagcaagtgagtaactttttcaacaatattcctgatgatctcactttcgttcctat 5149276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 5069265 - 5069390
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    |||||||||||||| ||||||||||| || | ||| || |||| || |||||| |||||||||| ||||||||||  |||  ||||||||||||||||||    
T  5069265 agttgaatcatatcctgcactcgagattcaactcccactggattattagcaataaacaagtctgccttgtcaagcttacgcgtaacattttcaacaatat 5069364  T
Q  149 ctttgataacctcactttcattccta 174  Q
    | |  ||||| |||||||||||||||    
T  5069365 cctctataacatcactttcattccta 5069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5159641 - 5159814
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| ||||| || |||||||| || |||||  ||||||  |||| ||| | |||||||||||||||| | | ||| || |||| ||||||||    
T  5159641 ccccacatcccaagtagcagtacatcattggagtgttggatgtctagcagttcaataacatcttgcactcgagaaccaactcccacaggattatcagcaa 5159740  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| |||||||| ||||||||| |  |||  |||||||||||||| ||||| |||| | ||| |||||||    
T  5159741 tgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatccttgatgaccttattttgattccta 5159814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 5075920 - 5076044
Alignment:
Q  50 gttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatc 149  Q
    |||||||||||||||  |||||||| |||| ||| || |||| ||||||||||||||| |||||||||||||||||||||  || |||||| || |||||    
T  5075920 gttgaatcatatcttctactcgagattcgactcccactggattatcagcaatgaacaaatctgtcttgtcaagcaaacgtgaaatattttccactatatc 5076019  T
Q  150 tttgataacctcactttcattccta 174  Q
     | |||  | |||||||||||||||    
T  5076020 gtcgattgcttcactttcattccta 5076044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5341556 - 5341376
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||| |||||||| |||||||||||||||  | || |  ||||||||||||||||||| ||| || || |  ||  | |||| |||| |||    
T  5341556 ccccacatccctaatagtagaatatcatttgattgttggatatcaagcagttgaatcatatcttgcaatcgggattcaacccccgctggattatcaacaa 5341457  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaa 181  Q
      |||||||||||||||| |||||| ||  |||| ||||| || ||||| |||||| |||| |||||||||||||| ||||    
T  5341456 caaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttgatagcctcgctttcattcctataaaaaa 5341376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5431269 - 5431144
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| |||||||  ||| |||||||||||||  ||||||   ||||||| | |||||||| ||||||||| ||||| || || | ||||||||    
T  5431269 ccccacatcccaagtagtattacaccatttgattgttggatgtctagccgttgaataacatcttgcattcgagaatcaattcccactggcttatcagcaa 5431170  T
Q  101 tgaacaagtctgtcttgtcaagcaaa 126  Q
    |||||| |||| ||||||||||||||    
T  5431169 tgaacatgtctttcttgtcaagcaaa 5431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5276567 - 5276394
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||||||||  |||||||||||||| ||||||||  ||||||  | | |||||||||||||||||||||| | || ||| || |||| ||||||||    
T  5276567 ccccacatccctaccagtagaacatcattagattgttggatgtctagcaatggaatcatatcttgcactcgagatttgagtcccactggattatcagcaa 5276468  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
      ||||||  |||||||||||  |||| |  ||| || ||||||||||  || ||  | |||||||||||||||    
T  5276467 caaacaagcatgtcttgtcaataaaacatgaaactttgtcaacaatattcttaatcgcttcactttcattccta 5276394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 5394818 - 5394732
Alignment:
Q  88 ggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| |||||| ||||||||||| |||||||||||||||  || |||||||||||| || |||||  | |||||||||||||||    
T  5394818 ggataattagcaataaacaagtctgttttgtcaagcaaacgtgaaatattttcaacaatgtcattgattgcgtcactttcattccta 5394732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 5444899 - 5444775
Alignment:
Q  50 gttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatc 149  Q
    ||||||||| ||||| ||||||||| || ||||| || |||| ||  ||||| ||||||||||| |||| ||||||| ||  ||  || ||||||||| |    
T  5444899 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 5444800  T
Q  150 tttgataacctcactttcattccta 174  Q
    ||||| | |||||||||||||||||    
T  5444799 tttgacatcctcactttcattccta 5444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 5692419 - 5692539
Alignment:
Q  55 atcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttga 154  Q
    |||||||||||||||||||  || | ||| || | || || |||||  ||||||||| ||||||| |||||||| | ||| ||||  ||||||||||| |    
T  5692419 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 5692518  T
Q  155 taacctcactttcattcctat 175  Q
    || |||||||||| |||||||    
T  5692519 tagcctcactttcgttcctat 5692539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5134045 - 5134218
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttga------gtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    |||||||||||||| |||| ||||||||||||||||| |       ||||||  | ||||||||||||| |||  ||||| || | ||| || |||| ||    
T  5134045 ccccacatccctagaagtataacatcatttgattgttcaatatctttgtctagcaattgaatcatatctagcatacgagattcaactcccactggattat 5134144  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
     |||||| ||||| ||| | ||||||||||||||  ||||||||||      |||||||||| ||||| |||||||||||    
T  5134145 tagcaataaacaaatctattttgtcaagcaaacgcgtaacattttc------atctttgatagcctcattttcattccta 5134218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5348273 - 5348236
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttg 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5348273 ccccacatccctagtaggagaacatcatttgattgttg 5348236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 48015496 - 48015618
Alignment:
Q  52 tgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctt 151  Q
    |||||||||||| |||||| ||| || || || || | || || |||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  48015496 tgaatcatatctcgcactcaagattcaatccccactgaattattagcaataaacaagtctgtcttgtcaagcaatcgtgtaatattttcaacaatatctt 48015595  T
Q  152 tgataacctcactttcattccta 174  Q
    | |||||||| ||||||||||||    
T  48015596 taataacctcgctttcattccta 48015618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10805 - 10952
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||| ||||||||||| ||||||||||||||||||||| | | ||  |   ||||| | |  | ||||||||| | || ||| ||||||| |||| |||    
T  10805 ccccaaatccctagtagcagaacatcatttgattgttgaatttttagcaacggaatcgttttgtccactcgagatttgactcccaccggattatcaacaa 10904  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
     ||| |||||||||||||||||||||    |||| |||||||||||||    
T  10905 cgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University