View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_153 (Length: 216)
Name: NF16091_high_153
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_153 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3015143 - 3015362
Alignment:
| Q |
1 |
tcagattccaaaacgtgtaatacaaggcaagtattaaaatttcaaacacaactaataataactgcaaaactcaaacacgatgatttata----cacaaac |
96 |
Q |
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| T |
3015143 |
tcagattccaaaacgtgtaatacaaggcaagtattaaaatttcaaacacaactaataataactgcaaaactcaaacatgatgatttatatatacacaaac |
3015242 |
T |
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| Q |
97 |
aaacactatcactaagagaagcattcatgaatggaagcctcaaaaaggccttcttcttgtatctcaaagtggcaatactcatcaaccaaaagcaaaattg |
196 |
Q |
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| T |
3015243 |
aaacactatcactaagagaagcattcatgaatggaagcctcaaaaaggccttcttcttgtatctcaaagtggcaatactcatcaaccaaaagcaaacttg |
3015342 |
T |
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| Q |
197 |
tgagaaacttcaatcctgtt |
216 |
Q |
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|||| ||||||||||||||| |
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| T |
3015343 |
tgagtaacttcaatcctgtt |
3015362 |
T |
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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 18359867 - 18359947
Alignment:
| Q |
133 |
gcctcaaaaaggccttcttcttgtatctcaaagtggcaatactcatcaaccaaaagcaaaattgtgagaaacttcaatcctgtt |
216 |
Q |
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| T |
18359867 |
gcctcaaaaaggccttc---ttgtatctcaaaatggcaatactcttcaaccaaaagcaaaattgtgagtaacttcaatcctgtt |
18359947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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