View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_17 (Length: 544)
Name: NF16091_high_17
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 39863714 - 39864027
Alignment:
| Q |
14 |
cacagaaaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttt |
113 |
Q |
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| T |
39863714 |
cacagcaaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttt |
39863813 |
T |
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| Q |
114 |
tatttaacagtgtactttttgaggtcttccaatgtcaatatccctcaagccttctaaacatctttaactaaattaatgccaattattccaccataaaaag |
213 |
Q |
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| T |
39863814 |
tgtttaacagtgtactttttgaggtcttccaatgtcaatatcccgccggccttctgaacatctttaactaaattaatgccaattattccaccatacaaag |
39863913 |
T |
|
| Q |
214 |
cttgtggaccaaactttgcaattaaactaagagtttctgctagtttcttattgtagcatatttcacctgccttcaagagttttccatgtggtgcaaagac |
313 |
Q |
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|||||||||||||||| |||||| | ||| || || ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| || |
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| T |
39863914 |
cttgtggaccaaacttcgcaattgcttttagacttgctcctagtttcttattataacatatttcacctggtttcaagagttttccatgtggtgcaaatac |
39864013 |
T |
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| Q |
314 |
actactaagaccaa |
327 |
Q |
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|||||||||||||| |
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| T |
39864014 |
actactaagaccaa |
39864027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 27115004 - 27115309
Alignment:
| Q |
20 |
aaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttttattta |
119 |
Q |
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| T |
27115004 |
aaatcaacttaccagcatcattgcaggtccacctgaaggaggaggcatactaaggagttttaatccaagaaaatctatagatataggttcctttggttta |
27115103 |
T |
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| Q |
120 |
acagtgtactttttgaggtcttccaatgtcaatatccctcaagccttctaaacatctttaactaaattaatgccaattattccaccataaaaagcttgtg |
219 |
Q |
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| T |
27115104 |
acagtgtatcttttgaggtcttccacagttaatatccctttagccttctgaacatctttaactaggttgaggccaattggtccaccatagaaagcttttg |
27115203 |
T |
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| Q |
220 |
gaccaaactttgcaattaaactaagagtttctgctagtttcttattgtagcatatttcacctgccttcaagagttttccatgtggtgcaaagacactact |
319 |
Q |
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| T |
27115204 |
gaccatacttagaaattactcttaaagtttttcctagtttcttattgtaaaatagttcacctactttcaagagttttccatgtggtgcaaacacactacg |
27115303 |
T |
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| Q |
320 |
aagacc |
325 |
Q |
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|||||| |
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| T |
27115304 |
aagacc |
27115309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 39864221 - 39864317
Alignment:
| Q |
325 |
caaagtagtgttgccaccatacatatcctggaaaaaatggatgtat----tatattgcatagaagagtgatttcaacaaatttattgactatagcgt |
417 |
Q |
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| T |
39864221 |
caaagtaatgttgccaccatacatatcctggaaaaaatggatgtatcatgtatatggcatagaagattgatttcgacaaattcattcactatagcgt |
39864317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 27115505 - 27115540
Alignment:
| Q |
325 |
caaagtagtgttgccaccatacatatcctggaaaaa |
360 |
Q |
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| T |
27115505 |
caaagtagtattgccaccatacatatcctggaaaaa |
27115540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 527
Target Start/End: Original strand, 39865101 - 39865140
Alignment:
| Q |
488 |
ttacttcgtttcttgtttttgtgagtccatttttggcaga |
527 |
Q |
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| T |
39865101 |
ttacttcatttcttgtttttgtgtgtccatttttggcaga |
39865140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 36341001 - 36341068
Alignment:
| Q |
350 |
tcctggaaaaaatggatgtattatattgcatagaagagtgatttcaacaaatttattgactatagcgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36341001 |
tcctggaaaaaatggatgtattatattgcatagaagagtgatttcaacaaattcattgactatagcgt |
36341068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 527
Target Start/End: Original strand, 36341868 - 36341907
Alignment:
| Q |
488 |
ttacttcgtttcttgtttttgtgagtccatttttggcaga |
527 |
Q |
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| T |
36341868 |
ttacttcgtttcttgtttttgtgagtccatttttggcaga |
36341907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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