View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_18 (Length: 543)
Name: NF16091_high_18
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_18 |
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| [»] scaffold0066 (1 HSPs) |
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| [»] scaffold0407 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 3530014 - 3530541
Alignment:
| Q |
1 |
gatatgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataattagaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530014 |
gatatgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataattagaaac |
3530113 |
T |
|
| Q |
101 |
ggatggagcaatattttgcaagttagtatgaatgataggtgagtagaaattgcctccatttcaatgctattaagtgaacactacatatcaacatttgaca |
200 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3530114 |
ggagggagcaatgttttgcaagttagtatgaatgataggtgagtagaaattgcctccatttcaatgctattaagtgaacactatatatcaacatttgaca |
3530213 |
T |
|
| Q |
201 |
ccggagaatgttattaatcatgtggatgacgatcaaattctttgaatcacatttctatcaaagtaaatttgtttaagcgaggaattcttaatcataacga |
300 |
Q |
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| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530214 |
ctggagaatattattaatcatgtagatgacgatcaaattctttgaatcatatttctaccaaagtaaatttgtttaagcgaggaattcttaatcataacga |
3530313 |
T |
|
| Q |
301 |
tcaattgtatgtgggaggttgtgatatgattgaagacatggattacttgtttgcaaaatgtgactttttcagtagaatcttgcacttggtttgtcattgg |
400 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
3530314 |
tcaattgtatgtgggaggttgtggtatgattgaagacatggattacttgtttgcaaaatgtaactttttcagtagaatcttgtacttggtttgtcattgg |
3530413 |
T |
|
| Q |
401 |
ttagactttgttattgtttctcatgaaactcttttggatcacctatcacattttggtggtttaggagggttctcgaaacaagttcatttagccttgaata |
500 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530414 |
ttagactttgttattgtttctcatggaactcttttggatcacctatcacattttggtggtttaggagggttctcgaaacaagttcatttagccttgaata |
3530513 |
T |
|
| Q |
501 |
ttatttgattatcttgcgtgtagattat |
528 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3530514 |
ttatttgattatcttgcgtgtagattat |
3530541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 15898418 - 15898361
Alignment:
| Q |
11 |
aaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaa |
68 |
Q |
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||||||||||||||||||||| ||| ||||| | |||| |||||||||||||||||| |
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| T |
15898418 |
aaaaataataataaatgcatctagtaatttgaaaaagagtttatatttagggacaaaa |
15898361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 250 - 528
Target Start/End: Complemental strand, 9827824 - 9827546
Alignment:
| Q |
250 |
catttctatcaaagtaaatttgtttaagcgaggaattcttaatcataacgatcaattgtatgtgggaggttgtgatatgattgaagacatggattacttg |
349 |
Q |
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||||| ||||||| |||||||||||| ||||| |||| |||||||||| |||||||| | ||||||||||| ||||| |||||||||| || || |
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| T |
9827824 |
catttttatcaaaataaatttgtttaggcgagaaattattaatcataatgatcaattatgcacgggaggttgtggtatgaatgaagacatgaatcgttta |
9827725 |
T |
|
| Q |
350 |
tttgcaaaatgtgactttttcagtagaatcttgcacttggtttgtcattggttagactttgttattgtttctcatgaaactcttttggatcacctatcac |
449 |
Q |
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|||||||||||||||||||| | | ||| | | |||| |||| ||||||||||| ||||||||| |||||| | | |||| | | |||||||||| ||| |
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| T |
9827724 |
tttgcaaaatgtgactttttttgcaaaatttggtacttagtttctcattggttaggctttgttatagtttctaagggaactatgtcggatcacctagcac |
9827625 |
T |
|
| Q |
450 |
attttggtggtttaggagggttctcgaaacaagttcatttagccttgaatattatttgattatcttgcgtgtagattat |
528 |
Q |
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||||||||||||||||||| || |||||||| |||| | |||||||||||||||||| ||||||| |||| |||||| |
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| T |
9827624 |
attttggtggtttaggaggattttcgaaacatgttcgtctagccttgaatattatttagttatcttatgtgtggattat |
9827546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 12998645 - 12998564
Alignment:
| Q |
12 |
aaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataat |
93 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
12998645 |
aaaaaaataattaatgcatcgagtaatttgtataagggcttatatttagggacacatttttttctcaaagagtgcttataat |
12998564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 41672490 - 41672404
Alignment:
| Q |
11 |
aaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaa-gtttttctcaaaaagtgcttataattag |
96 |
Q |
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||||| ||||||||||||||| ||| ||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
41672490 |
aaaaaaaataataaatgcatctagtaatttgtataagggcttatatttagggacaaaacttttttctaaaagagtgcttataattag |
41672404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 528
Target Start/End: Complemental strand, 14653 - 14561
Alignment:
| Q |
436 |
ggatcacctatcacattttggtggtttaggagggttctcgaaacaagttcatttagccttgaatattatttgattatcttgcgtgtagattat |
528 |
Q |
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|||||||||| ||||||||||||||| |||| || ||||| ||| ||| || |||| |||||||||||| |||||||| ||||||||||| |
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| T |
14653 |
ggatcacctagtgcattttggtggtttatgaggtttttcgaagcaaattcgctttgcctcgaatattatttggttatcttgtgtgtagattat |
14561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0407
Description:
Target: scaffold0407; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 528
Target Start/End: Original strand, 1826 - 1918
Alignment:
| Q |
436 |
ggatcacctatcacattttggtggtttaggagggttctcgaaacaagttcatttagccttgaatattatttgattatcttgcgtgtagattat |
528 |
Q |
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|||||||||| ||||||||||||||| |||| || ||||| || ||| || |||| |||||||||||| |||||||| ||||||||||| |
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| T |
1826 |
ggatcacctagtgcattttggtggtttatgaggtttttcgaagcagattcgctttgcctcgaatattatttggttatcttgtgtgtagattat |
1918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0407; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 528
Target Start/End: Original strand, 8292 - 8384
Alignment:
| Q |
436 |
ggatcacctatcacattttggtggtttaggagggttctcgaaacaagttcatttagccttgaatattatttgattatcttgcgtgtagattat |
528 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| || ||||| || ||| || |||| |||||||||||| |||||||| ||||||||||| |
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| T |
8292 |
ggatcacctagtgcattttggtggtttatgaggtttttcgaagcagattcgctttgcctcgaatattatttggttatcttgtgtgtagattat |
8384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 8818094 - 8818002
Alignment:
| Q |
5 |
tgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataattaga |
97 |
Q |
| |
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||||| |||||||||||||||| |||| ||| |||| || || | ||||||||||| ||| | | ||||||||||| |||| || |||||||| |
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|
| T |
8818094 |
tgtttaaaaaataataataaatacatctagtaatttatataaaagcttatatttagagaccacaatttttctcaaagagtgtttgtaattaga |
8818002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 33231988 - 33232046
Alignment:
| Q |
12 |
aaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagt |
70 |
Q |
| |
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|||| ||||||||||||||| ||| ||||| | | ||| |||||||||||||||||||| |
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| T |
33231988 |
aaaaaaataataaatgcatctagtaatttgaaaatgaatttatatttagggacaaaagt |
33232046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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