View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_19 (Length: 531)
Name: NF16091_high_19
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Complemental strand, 30545144 - 30544629
Alignment:
| Q |
7 |
gatatgaatatgtcatcattttttgtgtgaaggaatatgaatatgtcatcatgaattgtttacactataatataatatannnnnnnn---------caat |
97 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30545144 |
gatatgaatatgtcatcatttttttttggaaggaatatgaatatgtcatcatgaattgtttacactataatataatatatatatatatatatttttcaat |
30545045 |
T |
|
| Q |
98 |
gatctgttttgaataaaatatagttggttgcctcccttatacaccaaaaatagaagttggttatgtaacttttttctgacgcggtagctggaagttgaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545044 |
gatctgttttgaataaaatatagttggttgcctcccttatacaccaaaaatagaagttggttatgtaacttttttctgacgcggtagctggaagttgaag |
30544945 |
T |
|
| Q |
198 |
ataggtatcacaatattgaaacnnnnnnnattgctaagtcaaattattaggcttagctgtaattaggatttaggagaatggtaaattgatcagattagat |
297 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30544944 |
ataggtatcacaatattgaaactttttttattgctaagtcaaattattaggcttagctgtaattaggatttaggaaaatggtaaattgatcagattagat |
30544845 |
T |
|
| Q |
298 |
gtgttatatggtaaagaatattcggatcatatacaaagtgcataaattaaagtttgtctaggaagctttatttattttattttgggggtacagaagcaaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30544844 |
gtgttatatggtaaagaatattcggatcatatacaaagtgcataaattaaagtttgtctaggaagctttatttattttattttgggggtacagaagcaaa |
30544745 |
T |
|
| Q |
398 |
gaacaatgacacaaactacatattgggtttcctttatatcttcatccagtttgaaaaattggtttcatcaattgtggaatttgatgcttgtgtttatata |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30544744 |
gaacaatgacacaaactacatattgggtttcctttatatcttcatccagtttgaaaaattggtttcatcaattgtggaatttgatgcttgtgtttatata |
30544645 |
T |
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| Q |
498 |
ctttttataactctgt |
513 |
Q |
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|||||||||||||||| |
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| T |
30544644 |
ctttttataactctgt |
30544629 |
T |
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